View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1398_low_8 (Length: 389)
Name: NF1398_low_8
Description: NF1398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1398_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 4e-51; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 96 - 299
Target Start/End: Original strand, 31684477 - 31684679
Alignment:
| Q |
96 |
actatgttggtggagacatgtttaaagaaattccgccaagagctgcaattttgttgaaggtaatannnnnnnnnnn-agggatgttgaaggtaaatgtta |
194 |
Q |
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| T |
31684477 |
actatgttggtggagacatgtttaaagaaattccgccaacagctgcaattttgttgaaggtaatatttttttttatgagggatgttgaaggtaaatgtta |
31684576 |
T |
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| Q |
195 |
aaatattcatctatggagnnnnnnnnnnngtttgttttgaaaactcagtatccaatctaagaatcactaataacagccaattagataacatgtttcctgg |
294 |
Q |
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| T |
31684577 |
aaatattcatttatggagtttttgttta--tttgttttgaaaactcagtatccaatctaagaatcactaataacggccaattagataacatttttcctcg |
31684674 |
T |
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| Q |
295 |
ttctc |
299 |
Q |
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||||| |
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| T |
31684675 |
ttctc |
31684679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 31734857 - 31734918
Alignment:
| Q |
97 |
ctatgttggtggagacatgtttaaagaaattccgccaagagctgcaattttgttgaaggtaa |
158 |
Q |
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| T |
31734857 |
ctatgttggtggagacatgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaa |
31734918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 31703016 - 31703078
Alignment:
| Q |
96 |
actatgttggtggagacatgtttaaagaaattccgccaagagctgcaattttgttgaaggtaa |
158 |
Q |
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| T |
31703016 |
actatgttggtggagacatgtttaaagaaattcctccaacagacgccattttgttgaaggtaa |
31703078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 31711452 - 31711512
Alignment:
| Q |
98 |
tatgttggtggagacatgtttaaagaaattccgccaagagctgcaattttgttgaaggtaa |
158 |
Q |
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| T |
31711452 |
tatgttggtggagacatgtttaaggaaattccaccagcagatgcaattttgttgaaggtaa |
31711512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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