View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13990_high_2 (Length: 459)
Name: NF13990_high_2
Description: NF13990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13990_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 454
Target Start/End: Complemental strand, 32974390 - 32973955
Alignment:
| Q |
19 |
atacttcttcctctagaacttcatgcaagaaggaagacttcacatccattgcagaattttccacttatattgagccactagagagattgtgagtcttatg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32974390 |
atacttcttcctctagaacttcatgcaagaaggaagatttcacatccattgtagaactttccacttatattgagccactagagagattgtgagtcttatg |
32974291 |
T |
|
| Q |
119 |
gtgtctagatgagagatcggggaaaacacctcatcataatcaatcccaaccttttcattgtagccttttgtgactagtattttcgtctaactttcaattt |
218 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32974290 |
gtgtctagatgagagaccggggaaaacacctcatcataatcaatcccaaccttttcattgtagccttttgtgactagtattatcgtctaactttcaattt |
32974191 |
T |
|
| Q |
219 |
ctccattgacattcttctttatttgtacactcacttgacaccgatggccttatgccctttaggtagggagatgagttcttatgggttgttcctcttcgtc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32974190 |
ctccattgacattcttctttatttgtacactcacttgacaccgatggcctaatgccctttaggtagggagatgagttcttatgggttgttcctcttcgtc |
32974091 |
T |
|
| Q |
319 |
tctaatttattcatttgttacattttttcatctcttatcttgcacaacttcttcaaatttcattggttcgaaatctgcagaggcataacaatgtgatatt |
418 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32974090 |
tctaatttattcattagttacattttttcatctcttatcttgcacaacttcttcaaatttcattggttcgaaatctgcagaggcataacaatgtgatatt |
32973991 |
T |
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| Q |
419 |
atcaatttccattgttttcttcataaagatcttcat |
454 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
32973990 |
atcaatttccattgttttcttcataaagatcttcat |
32973955 |
T |
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