View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13990_high_5 (Length: 378)
Name: NF13990_high_5
Description: NF13990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13990_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 360
Target Start/End: Original strand, 36441462 - 36441803
Alignment:
| Q |
16 |
aatatttcaaattatatgttctaaaaggtgaaaaagtgtttaaaaaacatccataaactctacattttttgaattttaaaactcaaaatagtggcaaaaa |
115 |
Q |
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| T |
36441462 |
aatatttcaaattatat---ctaaaaggtgaaaaagtgttttaaaaacatccataaactctacatttttttaattttaaaactcaaaatagtggcaaaaa |
36441558 |
T |
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| Q |
116 |
gcttgaagaatatggtcctttaacagtttaaccttccgacgacctcacttgaattaaattttaaaatcaaatctcatagacacaattccttgcaattttg |
215 |
Q |
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| T |
36441559 |
gcttgaagaatatggtcctttaacagtttaaccttccgacgacctcacttgaattaaattttaaaatcaaatctcatagacacaattccttgcaattttg |
36441658 |
T |
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| Q |
216 |
aagtttgtcctagtaggctaaaattaggcccaacacatatcgtgttctaatttcttttctatttttaacaagcataaaacaattaactttaatattttga |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
36441659 |
aagtttgtcctagtaggctaaaattaggcccaacacatatcgtgttctaatttcttttctatttttaacaagcataaaaaaataaactttaatattttga |
36441758 |
T |
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| Q |
316 |
ccaaaaataaatattaatatgaggtatttgtcagatccataatct |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36441759 |
ccaaaaataaatattaatatgaggtatttgtcagatccataatct |
36441803 |
T |
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