View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13990_high_7 (Length: 350)
Name: NF13990_high_7
Description: NF13990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13990_high_7 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 40821513 - 40821849
Alignment:
| Q |
1 |
ccatctttggagataagagtttcgatgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatga |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40821513 |
ccatctttggagataagagtttcagtgtcctttatgtactgggatgatgtgatgttggttatggcaatactaacttgtaacaaagtgcaaaacaaaatga |
40821612 |
T |
|
| Q |
101 |
acagaacagagagcatatttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttattaatgatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40821613 |
acagaacagagagcatatttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttattaataatg |
40821712 |
T |
|
| Q |
201 |
atttgagatttccttaaagtcaagagtctaaaaaatcacaagtaaatcatggttcttaaaatctctatcattttaaaaacttaacgttgtttgagtcatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
40821713 |
atttgagatttccttaaagtcaagagtctaaaaaatcacaagtaaatcatggttctgaaaatctctatcattttaagaacttaatgttgtttgagtcatt |
40821812 |
T |
|
| Q |
301 |
tcactacttatttaggttatcacttttcttttctttt |
337 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
40821813 |
tcactacttatttaggttatcacttttcttttctttt |
40821849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 40826197 - 40826306
Alignment:
| Q |
1 |
ccatctttggagataagagtttcgatgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatga |
100 |
Q |
| |
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||||||||||||| |||||||| |||||| ||| |||| |||||||||||| || ||| |||||||||| ||||| |||||||| ||| ||| | |
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| T |
40826197 |
ccatctttggagagtagagtttcagggtccttgatgaattgagatgatgtgatggtgtctattgcaatactaaattgtagggaatagcaacacagaataa |
40826296 |
T |
|
| Q |
101 |
acagaacaga |
110 |
Q |
| |
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||| |||||| |
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| T |
40826297 |
acaaaacaga |
40826306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 8e-80; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 20292315 - 20292021
Alignment:
| Q |
1 |
ccatctttggagataagagtttcgatgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatga |
100 |
Q |
| |
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||||||||||||||||||||||| |||||| ||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
20292315 |
ccatctttggagataagagtttcagcgtccttgatgaattgggatgatgtgatggtgtttatggcaatattaacttgtaacaaatagcaaaacaaaatga |
20292216 |
T |
|
| Q |
101 |
acagaacagagagcatatttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttattaatgatg |
200 |
Q |
| |
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|||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
20292215 |
acagaacagagagcatatttga------actgaa--acccattatatgatcaacaagtagactatgatacaaaaa-aaccactctttcttattaataatg |
20292125 |
T |
|
| Q |
201 |
atttgagatttc---cttaaagtcaagagtctaaaaaatcacaagtaaatcatggttcttaaaatctctatcattttaaaaacttaacgttgtttgagtc |
297 |
Q |
| |
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|||||||||||| ||||| |||||||||||||||||||||| |||||||| ||||| |||| ||| |||| ||||| |||| ||| |||||| | |
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| T |
20292124 |
atttgagatttccttcttaacgtcaagagtctaaaaaatcacaggtaaatcaaagttctaaaaa----tattatttcaaaaaattaatgttctttgagac |
20292029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 20301517 - 20301393
Alignment:
| Q |
1 |
ccatctttggagataagagtttcgatgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatga |
100 |
Q |
| |
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||||||||||| | |||||||| |||||| ||| ||||||||||||||||| || ||| | |||||||| ||||||||||| |||||| ||||| |
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| T |
20301517 |
ccatctttggaaagtagagtttcagggtccttgatgaattgggatgatgtgatggtgtctataccgatactaacacgtaacaaataggaaaacagaatga |
20301418 |
T |
|
| Q |
101 |
acagaacagagagcatatttgaaca |
125 |
Q |
| |
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||| |||| ||| || ||||||||| |
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| T |
20301417 |
acaaaacaaagaacagatttgaaca |
20301393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 20064889 - 20064991
Alignment:
| Q |
1 |
ccatctttggagataagagtttcgatgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatga |
100 |
Q |
| |
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||||||||||||| || ||||| |||||| ||| ||||||||||||||||| || ||| | |||||||| ||||||||||| |||||| ||||| |
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| T |
20064889 |
ccatctttggagagtagtgtttcagggtccttgatgaattgggatgatgtgatggtgtctataccgatactaacatgtaacaaatacaaaaacacaatga |
20064988 |
T |
|
| Q |
101 |
aca |
103 |
Q |
| |
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||| |
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| T |
20064989 |
aca |
20064991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 20229356 - 20229247
Alignment:
| Q |
1 |
ccatctttggagataagagtttcgatgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatga |
100 |
Q |
| |
|
|||||||||||||| |||||||| ||| || || |||| |||||||||||| || ||| ||| |||||| |||| |||||||||| ||||||||| |
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| T |
20229356 |
ccatctttggagattagagtttcagggtctttgataaattgagatgatgtgatggtgtctataccaacactaacatgtaccaaatagcaacacaaaatga |
20229257 |
T |
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| Q |
101 |
acagaacaga |
110 |
Q |
| |
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| | |||||| |
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| T |
20229256 |
ataaaacaga |
20229247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 20261939 - 20261830
Alignment:
| Q |
1 |
ccatctttggagataagagtttcgatgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatga |
100 |
Q |
| |
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|||||||||||||| |||||||| ||| || || |||| |||||||||||| || ||| ||| |||||| |||| |||||||||| ||||||||| |
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| T |
20261939 |
ccatctttggagattagagtttcagggtctttgataaattgagatgatgtgatggtgtctataccaacactaacatgtaccaaatagcaacacaaaatga |
20261840 |
T |
|
| Q |
101 |
acagaacaga |
110 |
Q |
| |
|
| | |||||| |
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|
| T |
20261839 |
atacaacaga |
20261830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 193
Target Start/End: Original strand, 20092587 - 20092660
Alignment:
| Q |
118 |
tttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttatt |
193 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||||| | | | | ||||||||| ||||||||||||||||||||| |
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|
| T |
20092587 |
tttgaacaacacctgaaacac--attatgtgatcaatactaaaagtatgatacataaacaaccactctttcttatt |
20092660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 20296741 - 20296617
Alignment:
| Q |
1 |
ccatctttggagataagagtttcgatgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatga |
100 |
Q |
| |
|
|||||||| ||||| |||||||| |||||| ||| ||||||| ||||| || || |||||||||||| | |||||||||| |||||||| |||| |
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| T |
20296741 |
ccatcttttgagattagagtttcagggtccttgatgaattgggaagatgttatagtgtctatggcaatactcatgtgtaacaaattgcaaaacagaatgg |
20296642 |
T |
|
| Q |
101 |
acagaacagagagcatatttgaaca |
125 |
Q |
| |
|
| | |||||| | || ||||||||| |
|
|
| T |
20296641 |
ataaaacagaaaacagatttgaaca |
20296617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 135558 - 135603
Alignment:
| Q |
82 |
aaatagcaaaacaaaatgaacagaacagagagcatatttgaacaac |
127 |
Q |
| |
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||||||||||||||||| |||| |||||||| || ||||||||||| |
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|
| T |
135558 |
aaatagcaaaacaaaattaacaaaacagagaacacatttgaacaac |
135603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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