View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13990_low_1 (Length: 633)
Name: NF13990_low_1
Description: NF13990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13990_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 583; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 16 - 614
Target Start/End: Original strand, 5177537 - 5178134
Alignment:
| Q |
16 |
atgaataaccaaaaatatcatttctcaaatatattggtcacaatcacaaaagaaagaataaccaaaaatgtgagagtatactcactgaaagttccaagat |
115 |
Q |
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| T |
5177537 |
atgaataaccaaaaatatcatttctcaaatatattggttacaatcacaaaagaaagaataaccaaaaatgtgagagtatactcactgaaagttccaagat |
5177636 |
T |
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| Q |
116 |
agagatctttatttccagcaactctccctattcgagcttgccatcttccatgttgatggtgtctgctacaaagataataatcagagccaattttattttt |
215 |
Q |
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| T |
5177637 |
agagatctttatttccagcaactctccctattcgagcttgccatcttccatgttgatgatgtctgctacaaagataataatcagagccaattttattttt |
5177736 |
T |
|
| Q |
216 |
catatataaatcatatattaaaattaaattagtgcaatgcatgtgatgttagactcaccttgttactcctctatacatggaagcccctcttgagaatcca |
315 |
Q |
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| T |
5177737 |
catatataaatcatatattaaa-ttaaattagtgcaatgcatgtgatgttagactcaccttgttactcctctatacatggaagcccctcttgagaatcca |
5177835 |
T |
|
| Q |
316 |
ctgcttttcctgattttacaaagttaaattatatggttatgtatattgttaacatatggttttcaactgcataatgattgagatgcaaatatttgtacct |
415 |
Q |
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| T |
5177836 |
ctgcttttcctgattttacaaagttaaattatatggttatgtatattgttaacatatggttttcaactgcataatgattgagatgcaaatatttgtacct |
5177935 |
T |
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| Q |
416 |
tcttaaatgagcaacgtattctagtctagtcattttcttcatttcctcaagttccttttgataattttccaactataattatcatgagatcatgattaat |
515 |
Q |
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| T |
5177936 |
tcttaaatgagcaacgtattctagtctagtcattttcttcatttcctcaagttccttttgataattttccaactataattatcatgagatcatgattaat |
5178035 |
T |
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| Q |
516 |
tacatattagttactgtcagaactgaattagatccttgaattgaagacaaaatggcaaagaagttaatcattactggaaaatttatacgagtggagggt |
614 |
Q |
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| T |
5178036 |
tacatattagttactgtcagaactgaattagatccttgaattgaagacaaaatggcaaagaagttaatcattactggaaaatttatacgagtggagggt |
5178134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 40190594 - 40190506
Alignment:
| Q |
95 |
actcactgaaagttccaagatagagatctttatttccagcaactctccctattcgagcttgccatcttccatgttgatggtgtctgcta |
183 |
Q |
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| T |
40190594 |
actcactgaaagttccaagatatagatctttattaccagccactctaccaattctagcttgccatcttccatgttggtgatgtctgcta |
40190506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 411 - 489
Target Start/End: Complemental strand, 40190276 - 40190198
Alignment:
| Q |
411 |
taccttcttaaatgagcaacgtattctagtctagtcattttcttcatttcctcaagttccttttgataattttccaact |
489 |
Q |
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| T |
40190276 |
taccttcttaaatgagcaacatattcctgtcttgtcatattcttcatttcctcaagttgattttgataattttccaact |
40190198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 40190401 - 40190344
Alignment:
| Q |
272 |
accttgttactcctctatacatggaagcccctcttgagaatccactgcttttcctgat |
329 |
Q |
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| T |
40190401 |
accttgttactcctctgtacatggatgcccctcttgagaatccactgctttttctgat |
40190344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 24562109 - 24562180
Alignment:
| Q |
99 |
actgaaagttccaagatagagatctttatttccagcaactctccctattcgagcttgccatcttccatgttg |
170 |
Q |
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| T |
24562109 |
actgaaagttcccaagtatagatctttatttcctgcaactctgccaatccttgcttgccatcttccatgttg |
24562180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 181
Target Start/End: Original strand, 30618689 - 30618771
Alignment:
| Q |
99 |
actgaaagttccaagatagagatctttatttccagcaactctccctattcgagcttgccatcttccatgttgatggtgtctgc |
181 |
Q |
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| T |
30618689 |
actgaaagttcctaggtagagatctttgttgcctgcaactcttccaatcctagcttgccatctaccatgttgatgatgtctgc |
30618771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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