View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13990_low_10 (Length: 298)
Name: NF13990_low_10
Description: NF13990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13990_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 280
Target Start/End: Complemental strand, 3472995 - 3472713
Alignment:
| Q |
15 |
ttatactaaaaactatttacaagtctatttataagtggcagaaaatgtagttttgctggatgaaatgttgctcgcccaacgactcgaggtttcttcaaat |
114 |
Q |
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| T |
3472995 |
ttatactaaaaactatttacaagtctatttataagtggcagaaaatgtagtttcgctagatgaaatgttgctcacccaacgactcgaggtttcttcaaat |
3472896 |
T |
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| Q |
115 |
ggagagaaaagacaactcatctttcaaagtcattaaattgttataccttagttggtgaaatgtt-----------------gctcttgcttttctccctg |
197 |
Q |
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| T |
3472895 |
ggagagagaagacaactcatctttcaaagtcattaaattgttataccttagttggcgaaatgttgctcgaccaatgaagttgctcttgcttttctccctg |
3472796 |
T |
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| Q |
198 |
gaactctttgtccatgctcgctctcagctcactcctagctcgtccaacgaagtattttgcctaggaaaacatggacttatctt |
280 |
Q |
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| T |
3472795 |
gaactctttgtccatgctcgctctcagctcactcctagctcgtccaacgaagcattttgcctaggaaaacgtggacttatctt |
3472713 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 34273533 - 34273501
Alignment:
| Q |
28 |
tatttacaagtctatttataagtggcagaaaat |
60 |
Q |
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| T |
34273533 |
tatttacaagtctatttataagtgacagaaaat |
34273501 |
T |
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