View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13990_low_12 (Length: 275)
Name: NF13990_low_12
Description: NF13990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13990_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 43091560 - 43091818
Alignment:
| Q |
1 |
aatgaagaaaagaatatctatcacaatttgaccatagctgtcatgcatgtgtagaatagtttttatctacaccgacacaattatagaaccaaagcaccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43091560 |
aatgaagaaaagaatatctatcacaatttgaccatagctgtcatgcatgtgtagaatagtttttatctacaccgacacaattatagaaccaaagcaccaa |
43091659 |
T |
|
| Q |
101 |
taaacaaactgaaaaataccataatgaatctcaacccttgatttaatccattaactccattttcatcatcagcagctttctgatcatcagaatctgcatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43091660 |
taaacaaactgaaaaataccataatgaatctcaacccttgatttaatccattaactccattttcattatcagcagctttctgatcatcagaatctgcatc |
43091759 |
T |
|
| Q |
201 |
tgcatctggtccatctgccggtgagtctgcatcctcatccgccgccggcgccgccttct |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43091760 |
tgcatctggtccatctgccggtgagtctgcatcctcatccgccgccggcgccgccttct |
43091818 |
T |
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