View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13990_low_13 (Length: 263)
Name: NF13990_low_13
Description: NF13990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13990_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 50 - 251
Target Start/End: Original strand, 15405695 - 15405896
Alignment:
| Q |
50 |
cattattcccatttaacaggaacatccaacattttagaggcagtcaaactatgttctatgaaccactattcatacacaaatttgcatgattacacttttg |
149 |
Q |
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| T |
15405695 |
cattattcccatttaacaggaacatcgaacattttagaggcagtcaaactatgttctatgaaccactattcatacacaaatttgcatgattacacttttg |
15405794 |
T |
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| Q |
150 |
gtgactctgaaatgctttgtaaagaggggcgccaggattttgacctctgtacagcagcaggatttgtggaccctcctgacctttgcttgtgtctctctgc |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
15405795 |
gtgactctgaaatgctttgtaaagaggggcgccaggattttgacctctgtacagcagcaggatttgtggaccctcctgacctttgcttgtttctctctgc |
15405894 |
T |
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| Q |
250 |
tc |
251 |
Q |
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|| |
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| T |
15405895 |
tc |
15405896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 26460455 - 26460508
Alignment:
| Q |
153 |
actctgaaatgctttgtaaagaggggcgccaggattttgacctctgtacagcag |
206 |
Q |
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||||||| |||||||||||||| |||||||| ||||||| ||| ||||||||| |
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| T |
26460455 |
actctgagatgctttgtaaagacgggcgccatgattttggtctcggtacagcag |
26460508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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