View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13990_low_14 (Length: 247)

Name: NF13990_low_14
Description: NF13990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13990_low_14
NF13990_low_14
[»] chr4 (4 HSPs)
chr4 (145-230)||(40821360-40821445)
chr4 (5-107)||(40826117-40826219)
chr4 (5-62)||(40821478-40821535)
chr4 (145-230)||(40826030-40826114)
[»] chr7 (27 HSPs)
chr7 (5-107)||(20292293-20292395)
chr7 (5-99)||(20229334-20229428)
chr7 (5-99)||(20261917-20262011)
chr7 (5-99)||(20170355-20170449)
chr7 (5-99)||(20172348-20172442)
chr7 (5-99)||(20241284-20241378)
chr7 (145-230)||(20271591-20271675)
chr7 (15-99)||(20286932-20287016)
chr7 (145-228)||(20092290-20092372)
chr7 (145-228)||(20241389-20241471)
chr7 (5-99)||(20092383-20092477)
chr7 (5-99)||(20281800-20281894)
chr7 (145-230)||(20170260-20170344)
chr7 (145-230)||(20172253-20172337)
chr7 (145-228)||(20064724-20064806)
chr7 (145-228)||(20292398-20292480)
chr7 (158-228)||(20296836-20296906)
chr7 (145-230)||(20287027-20287111)
chr7 (5-98)||(20296719-20296812)
chr7 (157-228)||(20229450-20229521)
chr7 (157-228)||(20262033-20262104)
chr7 (16-99)||(20271497-20271580)
chr7 (158-228)||(20301612-20301682)
chr7 (156-221)||(20281915-20281980)
chr7 (36-90)||(20301526-20301580)
chr7 (15-90)||(20064826-20064901)
chr7 (179-211)||(20291946-20291978)


Alignment Details
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 40821445 - 40821360
Alignment:
Q  145 atatgggtggcaaaacagaaaccaaccactgaacgattctaatgggactgtcacaatatctgaagatggaaatcttgtggtattga 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40821445 atatgggtggcaaaacagaaaccaaccactgaacgattctaatgggactgtcacaatatctgaagatggaaatcttgtggtattga 40821360  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 40826219 - 40826117
Alignment:
Q  5 gaaactcttatctccaaagatggtaacttcacctttggattctttagccctaaaaattcttcaaatcgctacgctggaatttggtgcaagtctcagccta 104  Q
    ||||||||  ||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||| |||||||||||| ||||||||| |||    
T  40826219 gaaactctactctccaaagatggtaacttcaccttgggattctttagccctaagaattctacaaatcgctacgttggaatttggtggaagtctcagtcta 40826120  T
Q  105 caa 107  Q
    |||    
T  40826119 caa 40826117  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 40821535 - 40821478
Alignment:
Q  5 gaaactcttatctccaaagatggtaacttcacctttggattctttagccctaaaaatt 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40821535 gaaactcttatctccaaagatggtaacttcacctttggattctttagccctaaaaatt 40821478  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 40826114 - 40826030
Alignment:
Q  145 atatgggtggcaaaacagaaaccaaccactgaacgattctaatgggactgtcacaatatctgaagatggaaatcttgtggtattga 230  Q
    |||||||||||||| |||||||| | ||||||| ||||||||||||| | | || |||||||| ||||| ||||||| ||||||||    
T  40826114 atatgggtggcaaa-cagaaaccgatcactgaatgattctaatgggattattactatatctgaggatggcaatcttgcggtattga 40826030  T

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Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 20292293 - 20292395
Alignment:
Q  5 gaaactcttatctccaaagatggtaacttcacctttggattctttagccctaaaaattcttcaaatcgctacgctggaatttggtgcaagtctcagccta 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||| |||||||||||| ||||||||| |||    
T  20292293 gaaactcttatctccaaagatggtaacttcacctttggattctttagtcctaaaaactctacaaatcgctacgttggaatttggtggaagtctcagtcta 20292392  T
Q  105 caa 107  Q
    |||    
T  20292393 caa 20292395  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 20229334 - 20229428
Alignment:
Q  5 gaaactcttatctccaaagatggtaacttcacctttggattctttagccctaaaaattcttcaaatcgctacgctggaatttggtgcaagtctca 99  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| ||||||||    
T  20229334 gaaactctaatctccaaagatggtaacttcacctttggattctttagccctaaaaattctacaaaccgctacgttggaatttggtggaagtctca 20229428  T

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Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 20261917 - 20262011
Alignment:
Q  5 gaaactcttatctccaaagatggtaacttcacctttggattctttagccctaaaaattcttcaaatcgctacgctggaatttggtgcaagtctca 99  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| ||||||||    
T  20261917 gaaactctaatctccaaagatggtaacttcacctttggattctttagccctaaaaattctacaaaccgctacgttggaatttggtggaagtctca 20262011  T

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Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 20170449 - 20170355
Alignment:
Q  5 gaaactcttatctccaaagatggtaacttcacctttggattctttagccctaaaaattcttcaaatcgctacgctggaatttggtgcaagtctca 99  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| ||||||||    
T  20170449 gaaactctaatctccaaagacggtaacttcacctttggattctttagccctaaaaattctacaaaccgctacgttggaatttggtggaagtctca 20170355  T

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Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 20172442 - 20172348
Alignment:
Q  5 gaaactcttatctccaaagatggtaacttcacctttggattctttagccctaaaaattcttcaaatcgctacgctggaatttggtgcaagtctca 99  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| ||||||||    
T  20172442 gaaactctaatctccaaagacggtaacttcacctttggattctttagccctaaaaattctacaaaccgctacgttggaatttggtggaagtctca 20172348  T

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Target: chr7; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 20241284 - 20241378
Alignment:
Q  5 gaaactcttatctccaaagatggtaacttcacctttggattctttagccctaaaaattcttcaaatcgctacgctggaatttggtgcaagtctca 99  Q
    |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||||||| ||||||||    
T  20241284 gaaactctaatctccaaagacggtaacttcacttttggattctttagccctaaaaattctacaaaccgctacgttggaatttggtggaagtctca 20241378  T

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Target: chr7; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 20271591 - 20271675
Alignment:
Q  145 atatgggtggcaaaacagaaaccaaccactgaacgattctaatgggactgtcacaatatctgaagatggaaatcttgtggtattga 230  Q
    |||||||||||||| ||||||||||||| |||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20271591 atatgggtggcaaa-cagaaaccaaccattgaatgatactaatgggattgtcacaatatctgaagatggaaatcttgtggtattga 20271675  T

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Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 20286932 - 20287016
Alignment:
Q  15 tctccaaagatggtaacttcacctttggattctttagccctaaaaattcttcaaatcgctacgctggaatttggtgcaagtctca 99  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| | |||||||||||| ||||||||    
T  20286932 tctccaaagatggtaatttcacctttggattctttagccctaaaaactctacaaatcgctatgttggaatttggtggaagtctca 20287016  T

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Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 20092372 - 20092290
Alignment:
Q  145 atatgggtggcaaaacagaaaccaaccactgaacgattctaatgggactgtcacaatatctgaagatggaaatcttgtggtatt 228  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||||    
T  20092372 atatgggtggcaaa-cagaaaccaaccactgaatgattctaatgggattgtcataatatttgaagatggaaatcttgtggtatt 20092290  T

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Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 20241389 - 20241471
Alignment:
Q  145 atatgggtggcaaaacagaaaccaaccactgaacgattctaatgggactgtcacaatatctgaagatggaaatcttgtggtatt 228  Q
    |||||||||||||| |||||||||||||||||| || |||||||||| |||||| |||||||||||||||||||||||||||||    
T  20241389 atatgggtggcaaa-cagaaaccaaccactgaatgactctaatgggattgtcacgatatctgaagatggaaatcttgtggtatt 20241471  T

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Target: chr7; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 20092477 - 20092383
Alignment:
Q  5 gaaactcttatctccaaagatggtaacttcacctttggattctttagccctaaaaattcttcaaatcgctacgctggaatttggtgcaagtctca 99  Q
    |||| ||| |||||||||| |||||||||||||||||||||||||||||||| ||| ||| ||| |||||||| |||||||||||| ||||||||    
T  20092477 gaaaatctaatctccaaaggtggtaacttcacctttggattctttagccctacaaactctacaagtcgctacgttggaatttggtggaagtctca 20092383  T

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Target: chr7; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 20281800 - 20281894
Alignment:
Q  5 gaaactcttatctccaaagatggtaacttcacctttggattctttagccctaaaaattcttcaaatcgctacgctggaatttggtgcaagtctca 99  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||| || ||||||| |||||||| | | |||||||||||| ||||||||    
T  20281800 gaaactctaatctccaaagatggtaacttcaccttgggattctttagccgtagaaattctacaaatcgcaatgttggaatttggtggaagtctca 20281894  T

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Target: chr7; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 20170344 - 20170260
Alignment:
Q  145 atatgggtggcaaaacagaaaccaaccactgaacgattctaatgggactgtcacaatatctgaagatggaaatcttgtggtattga 230  Q
    ||||||||||| || ||||||| |||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  20170344 atatgggtggctaa-cagaaactaaccactgaatgattctaatgggattgtcacaatatttgaagatggaaatcttgtggtattga 20170260  T

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Target: chr7; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 20172337 - 20172253
Alignment:
Q  145 atatgggtggcaaaacagaaaccaaccactgaacgattctaatgggactgtcacaatatctgaagatggaaatcttgtggtattga 230  Q
    ||||||||||| || ||||||| |||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  20172337 atatgggtggctaa-cagaaactaaccactgaatgattctaatgggattgtcacaatatttgaagatggaaatcttgtggtattga 20172253  T

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Target: chr7; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 20064806 - 20064724
Alignment:
Q  145 atatgggtggcaaaacagaaaccaaccactgaacgattctaatgggactgtcacaatatctgaagatggaaatcttgtggtatt 228  Q
    |||||||||||||| ||||||||||||| | || ||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  20064806 atatgggtggcaaa-cagaaaccaaccaataaatgattctaatgggactatcaccatatctgaagatggaaatcttgtggtatt 20064724  T

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Target: chr7; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 20292398 - 20292480
Alignment:
Q  145 atatgggtggcaaaacagaaaccaaccactgaacgattctaatgggactgtcacaatatctgaagatggaaatcttgtggtatt 228  Q
    ||||||||||| || |||||||||||||||||| ||||||||||||||||   |||||||||||||||||||||||||||||||    
T  20292398 atatgggtggcgaa-cagaaaccaaccactgaatgattctaatgggactgcggcaatatctgaagatggaaatcttgtggtatt 20292480  T

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Target: chr7; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 20296836 - 20296906
Alignment:
Q  158 aacagaaaccaaccactgaacgattctaatgggactgtcacaatatctgaagatggaaatcttgtggtatt 228  Q
    |||| ||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  20296836 aacaaaaaccaatcactgaatgattctaatgggattgtcacaatatctgaagatggaaatcttgtggtatt 20296906  T

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Target: chr7; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 20287027 - 20287111
Alignment:
Q  145 atatgggtggcaaaacagaaaccaaccactgaacgattctaatgggactgtcacaatatctgaagatggaaatcttgtggtattga 230  Q
    |||||||||||||| ||||||| ||||||| |  ||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  20287027 atatgggtggcaaa-cagaaacaaaccactaagtgattctaatgggattgtcacaatatctgaggatggaaatcttgtggtattga 20287111  T

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Target: chr7; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 20296719 - 20296812
Alignment:
Q  5 gaaactcttatctccaaagatggtaacttcacctttggattctttagccctaaaaattcttcaaatcgctacgctggaatttggtgcaagtctc 98  Q
    |||||||| ||||| ||||||||||||||||||||||||| |||||| |||| ||| ||| |||||||||| | |||||||||||| |||||||    
T  20296719 gaaactctaatctcaaaagatggtaacttcacctttggatgctttagtcctataaactctacaaatcgctatgttggaatttggtggaagtctc 20296812  T

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Target: chr7; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 20229450 - 20229521
Alignment:
Q  157 aaacagaaaccaaccactgaacgattctaatgggactgtcacaatatctgaagatggaaatcttgtggtatt 228  Q
    |||||||||| |||||||||| ||||||||||||| |||||||||||||||| |||||||||| ||||||||    
T  20229450 aaacagaaacaaaccactgaatgattctaatgggattgtcacaatatctgaacatggaaatctcgtggtatt 20229521  T

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Target: chr7; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 20262033 - 20262104
Alignment:
Q  157 aaacagaaaccaaccactgaacgattctaatgggactgtcacaatatctgaagatggaaatcttgtggtatt 228  Q
    |||||||||| ||| |||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  20262033 aaacagaaacaaactactgaatgattctaatgggattgtcacaatatctgaacatggaaatcttgtggtatt 20262104  T

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Target: chr7; HSP #22
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 20271497 - 20271580
Alignment:
Q  16 ctccaaagatggtaacttcacctttggattctttagccctaaaaattcttcaaatcgctacgctggaatttggtgcaagtctca 99  Q
    |||||||||||||||||||||||| |||||||||||  ||||||||||| |||| ||||| | |||||||||||| ||||||||    
T  20271497 ctccaaagatggtaacttcaccttgggattctttagtgctaaaaattctacaaaccgctatgttggaatttggtggaagtctca 20271580  T

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Target: chr7; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 20301612 - 20301682
Alignment:
Q  158 aacagaaaccaaccactgaacgattctaatgggactgtcacaatatctgaagatggaaatcttgtggtatt 228  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| ||| ||||||    
T  20301612 aacagaaaccaaccactgaatgattctaatgggattgtcacaatatccgaagatggaaatattgaggtatt 20301682  T

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Target: chr7; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 20281915 - 20281980
Alignment:
Q  156 aaaacagaaaccaaccactgaacgattctaatgggactgtcacaatatctgaagatggaaatcttg 221  Q
    ||||||||||||| |||||||| ||||||||||||| | |||||||||| ||||||||||||||||    
T  20281915 aaaacagaaaccagccactgaatgattctaatgggaatttcacaatatccgaagatggaaatcttg 20281980  T

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Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 20301526 - 20301580
Alignment:
Q  36 cctttggattctttagccctaaaaattcttcaaatcgctacgctggaatttggtg 90  Q
    |||||||||||||||||||| |||||||| |||||||||||| ||||||||||||    
T  20301526 cctttggattctttagccctgaaaattctacaaatcgctacgttggaatttggtg 20301580  T

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Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 20064901 - 20064826
Alignment:
Q  15 tctccaaagatggtaacttcacctttggattctttagccctaaaaattcttcaaatcgctacgctggaatttggtg 90  Q
    ||||||||||||||  ||   ||||||||||||||||||||  |||||||  ||||||||||||||||||||||||    
T  20064901 tctccaaagatggttcctatgcctttggattctttagccctggaaattctataaatcgctacgctggaatttggtg 20064826  T

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Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 20291946 - 20291978
Alignment:
Q  179 gattctaatgggactgtcacaatatctgaagat 211  Q
    |||||||||||||||||||||||||||||||||    
T  20291946 gattctaatgggactgtcacaatatctgaagat 20291978  T

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