View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13990_low_3 (Length: 453)
Name: NF13990_low_3
Description: NF13990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13990_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 34 - 274
Target Start/End: Complemental strand, 4599310 - 4599070
Alignment:
| Q |
34 |
ttggagcatgggtgagtaggactctcttgagattattgttatatattatttgatggaaacttctatggtgtactcgcaaattaagttgtaccagtactct |
133 |
Q |
| |
|
||||| || ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4599310 |
ttggaccaagggtgagtaagactctcttgcaattattgttatatattatttgatggaaacttctatgatgtactcgcaaattaagttgtaccagtactct |
4599211 |
T |
|
| Q |
134 |
taactaaacaatatgtgcaggctgcgacttggttatatgtttgtccaaaggggattcaggacctactgttgtacacaaaggaaaagtataacaatcctac |
233 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4599210 |
taactaaacaatatgtgcaggctgcaacttggttatatgtttgtccaaaggggattcaggacctactgttgtacacaaaggaaaagtataacaatcctac |
4599111 |
T |
|
| Q |
234 |
gattatcataacagaaaatggtaatatttatattacattct |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4599110 |
gattatcataacagaaaatggtaatatttatattacattct |
4599070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 134 - 274
Target Start/End: Complemental strand, 4623637 - 4623497
Alignment:
| Q |
134 |
taactaaacaatatgtgcaggctgcgacttggttatatgtttgtccaaaggggattcaggacctactgttgtacacaaaggaaaagtataacaatcctac |
233 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4623637 |
taactaaacaatatgtgcaggctgcaacttggttatatgtttgtccaaagggtattcaggacctactgttgtacacaaaggaaaagtataacaatcctac |
4623538 |
T |
|
| Q |
234 |
gattatcataacagaaaatggtaatatttatattacattct |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4623537 |
gattatcataacagaaaatggtaatatttatattacattct |
4623497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 319 - 436
Target Start/End: Complemental strand, 4623485 - 4623368
Alignment:
| Q |
319 |
tcattatccttttttcagtgtctaacaaactaaaatttgaaaattctaataaatttaaatcataggtatgaatgaagtcaatgatccaacgctatcactg |
418 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4623485 |
tcattatccttttttcagtgtctaataaactaaaatttgaaaattctaataaatttaaatcataggtatgaatgaagtcaatgatccaacgctatcactg |
4623386 |
T |
|
| Q |
419 |
gaagaggcactcatggat |
436 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4623385 |
gaagaggcactcatggat |
4623368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 4623724 - 4623649
Alignment:
| Q |
12 |
aagaataaagatgggacatacattggagcatgggtgagtaggactctcttgagattattgttatatattatttgat |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||| |
|
|
| T |
4623724 |
aagaataaagatgggacatacattggagcatgggtgagtaagactctcttgagattattgttacatcttatttgat |
4623649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 354 - 436
Target Start/End: Complemental strand, 4598947 - 4598865
Alignment:
| Q |
354 |
tttgaaaattctaataaatttaaatcataggtatgaatgaagtcaatgatccaacgctatcactggaagaggcactcatggat |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || | ||||||| ||||||| ||||| |||||||| ||||||||| |
|
|
| T |
4598947 |
tttgaaaattctaataaatttaaatcataggtatgaacgaggacaatgattcaacgctgtcactcgaagaggcgctcatggat |
4598865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 259
Target Start/End: Complemental strand, 25016481 - 25016383
Alignment:
| Q |
161 |
cttggttatatgtttgtccaaaggggattcaggacctactgttgtacacaaaggaaaagtataacaatcctacgattatcataacagaaaatggtaata |
259 |
Q |
| |
|
||||| ||| ||||| ||||| |||||||||||| ||||||||| |||||||| ||||||||| ||||| |||| |||||||||||||||||||| |
|
|
| T |
25016481 |
cttggctatttgtttatccaagggggattcaggaactactgttgcacacaaagacaaagtataataatccattgatttacataacagaaaatggtaata |
25016383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 256
Target Start/End: Complemental strand, 25037744 - 25037649
Alignment:
| Q |
161 |
cttggttatatgtttgtccaaaggggattcaggacctactgttgtacacaaaggaaaagtataacaatcctacgattatcataacagaaaatggta |
256 |
Q |
| |
|
||||| ||| ||||| ||||| ||||||||| || |||||||||||||||||| |||||||||||| ||| |||| |||||| |||||||||| |
|
|
| T |
25037744 |
cttggctatttgtttatccaagggggattcaagaactactgttgtacacaaagacaaagtataacaaccctgtgatttacataaccgaaaatggta |
25037649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 436
Target Start/End: Complemental strand, 25037406 - 25037368
Alignment:
| Q |
398 |
aatgatccaacgctatcactggaagaggcactcatggat |
436 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
25037406 |
aatgatccaacgctatcacttgaagaggcgctcatggat |
25037368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 162 - 266
Target Start/End: Original strand, 18805377 - 18805481
Alignment:
| Q |
162 |
ttggttatatgtttgtccaaaggggattcaggacctactgttgtacacaaaggaaaagtataacaatcctacgattatcataacagaaaatggtaatatt |
261 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| || ||||||||||||| |||| ||||||||||||||||| ||| |||||||||||||||||||| | |
|
|
| T |
18805377 |
ttggctatatgtttatccaaaggggattcaagagctactgttgtacataaagaaaaagtataacaatcctgttatttacataacagaaaatggtaatact |
18805476 |
T |
|
| Q |
262 |
tatat |
266 |
Q |
| |
|
||||| |
|
|
| T |
18805477 |
tatat |
18805481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 436
Target Start/End: Original strand, 18805534 - 18805635
Alignment:
| Q |
335 |
agtgtctaacaaactaaaatttgaaaattctaataaatttaaatcataggtatgaatgaagtcaatgatccaacgctatcactggaagaggcactcatgg |
434 |
Q |
| |
|
||||||| | ||||||||||||||||| ||||||||||||||||||||||| | ||||| | |||||||||| |||||||| |||||| | ||||||| |
|
|
| T |
18805534 |
agtgtcttataaactaaaatttgaaaactctaataaatttaaatcataggtttaaatgagtacgatgatccaaccctatcactcgaagagacgctcatgg |
18805633 |
T |
|
| Q |
435 |
at |
436 |
Q |
| |
|
|| |
|
|
| T |
18805634 |
at |
18805635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University