View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13990_low_4 (Length: 388)

Name: NF13990_low_4
Description: NF13990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13990_low_4
NF13990_low_4
[»] chr2 (5 HSPs)
chr2 (7-134)||(40626413-40626540)
chr2 (20-133)||(6457543-6457656)
chr2 (6-140)||(18665098-18665232)
chr2 (60-138)||(18881824-18881902)
chr2 (172-211)||(21208535-21208574)
[»] chr1 (9 HSPs)
chr1 (148-211)||(1931687-1931750)
chr1 (6-139)||(26793696-26793829)
chr1 (6-113)||(50004939-50005046)
chr1 (148-211)||(1937943-1938006)
chr1 (6-120)||(9383270-9383384)
chr1 (17-138)||(4076400-4076521)
chr1 (17-135)||(19806810-19806930)
chr1 (148-211)||(1948757-1948819)
chr1 (17-140)||(4950129-4950252)
[»] chr7 (4 HSPs)
chr7 (6-133)||(39644849-39644976)
chr7 (14-137)||(45884692-45884815)
chr7 (6-135)||(41482463-41482592)
chr7 (6-140)||(24429627-24429762)
[»] chr4 (2 HSPs)
chr4 (7-138)||(19181457-19181588)
chr4 (17-142)||(45413824-45413949)
[»] chr5 (1 HSPs)
chr5 (7-134)||(32529420-32529549)
[»] chr3 (2 HSPs)
chr3 (26-98)||(32794946-32795018)
chr3 (87-120)||(41865858-41865891)
[»] chr8 (2 HSPs)
chr8 (6-135)||(556722-556851)
chr8 (6-107)||(38503885-38503985)
[»] chr6 (1 HSPs)
chr6 (25-113)||(31799978-31800065)


Alignment Details
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 40626540 - 40626413
Alignment:
Q  7 aaaggatgagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcatat 106  Q
    ||||| ||||||||||| ||||||||||| ||||||||||| ||||  |||| |||||| ||||| || |||||||||  |||||||| |||||||||||    
T  40626540 aaagggtgagtaggataggattagaaatatatttaaattatcctttcctattggtgcaccaaacagcagattgaatcaagatatgatagttttatcatat 40626441  T
Q  107 cttatctccctatcaagtgcaccaaacg 134  Q
    | | ||| ||||||| |||||| |||||    
T  40626440 cctgtcttcctatcatgtgcacgaaacg 40626413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 6457656 - 6457543
Alignment:
Q  20 gatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcatatcttatctccctat 119  Q
    ||||||||| ||||| ||||||| ||||  |||| |||| |||||| |||||||| |||||||||  |||||||| || ||||||||| | |||| ||||    
T  6457656 gatatgattggaaattgatttaatttatcattttctattggtgcaccaaacaacagattgaatcatgatatgatagttctatcatatcctgtctctctat 6457557  T
Q  120 caagtgcaccaaac 133  Q
    || |||||||||||    
T  6457556 catgtgcaccaaac 6457543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 140
Target Start/End: Complemental strand, 18665232 - 18665098
Alignment:
Q  6 caaaggatgagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcata 105  Q
    |||||| |||||| ||||| ||||||||||| ||||| |||| ||||  | || |||||| ||||||||||||  | ||  |||||||| ||||||||||    
T  18665232 caaagggtgagtaagatattattagaaataggtttaagttatcctttccttttggtgcacgaaacaacaaattacaccaagatatgatagttttatcata 18665133  T
Q  106 tcttatctccctatcaagtgcaccaaacggaccct 140  Q
    |  ||| | ||||||  ||||||||||||||||||    
T  18665132 ttctatgttcctatcttgtgcaccaaacggaccct 18665098  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 18881824 - 18881902
Alignment:
Q  60 gtgcactaaacaacaaattgaatcagtatatgataattttatcatatcttatctccctatcaagtgcaccaaacggacc 138  Q
    |||||| ||||| |||||| ||| || |||||||| |||||||||||||||||||  || || | ||||||||||||||    
T  18881824 gtgcaccaaacatcaaatttaattaggatatgatagttttatcatatcttatctctttaacatgcgcaccaaacggacc 18881902  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 21208535 - 21208574
Alignment:
Q  172 cattttaataacatagttttattcttatttttcattacag 211  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  21208535 cattttaataacatacttttattcatatttttcattacag 21208574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 1931750 - 1931687
Alignment:
Q  148 taggttgtacacaatctattatgtcattttaataacatagttttattcttatttttcattacag 211  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1931750 taggtcgtacacaatctattatgtcattttaataacattgttttattcttatttttcattacag 1931687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 6 - 139
Target Start/End: Complemental strand, 26793829 - 26793696
Alignment:
Q  6 caaaggatgagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcata 105  Q
    |||||| ||| ||||||| |||||||||||  ||||| |||| ||||| |||| |||||| |||||||  |||||||||| |||||||| || |||||||    
T  26793829 caaaggttgattaggataggattagaaataagtttaagttatccttttctattggtgcaccaaacaacggattgaatcaggatatgatagttctatcata 26793730  T
Q  106 tcttatctccctatcaagtgcaccaaacggaccc 139  Q
    || | ||| | ||||| ||||||||||| |||||    
T  26793729 tcatgtcttcttatcatgtgcaccaaacagaccc 26793696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 50004939 - 50005046
Alignment:
Q  6 caaaggatgagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcata 105  Q
    |||||| ||| ||||||| |||||||||||| |||||||||| |||||||||| |||||| ||||| ||||||  || |  |||||||| ||||||||||    
T  50004939 caaagggtgattaggataggattagaaataggtttaaattatccttttttattggtgcaccaaacatcaaattagattaagatatgatagttttatcata 50005038  T
Q  106 tcttatct 113  Q
    || |||||    
T  50005039 tcctatct 50005046  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 1938006 - 1937943
Alignment:
Q  148 taggttgtacacaatctattatgtcattttaataacatagttttattcttatttttcattacag 211  Q
    ||||| ||||||||||||||||||||||||| |||||| |||||||| |||||||| |||||||    
T  1938006 taggtcgtacacaatctattatgtcattttagtaacattgttttattattattttttattacag 1937943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 120
Target Start/End: Original strand, 9383270 - 9383384
Alignment:
Q  6 caaaggatgagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcata 105  Q
    |||||| ||||||||||| |||||||||| | ||||| |||| | ||  |||| |||||| ||||||   ||| |||||| || ||||| ||||||||||    
T  9383270 caaagggtgagtaggataagattagaaattggtttaatttatccgttcctattggtgcaccaaacaatggatttaatcaggatgtgatagttttatcata 9383369  T
Q  106 tcttatctccctatc 120  Q
    |||| ||||||||||    
T  9383370 tcttttctccctatc 9383384  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 4076400 - 4076521
Alignment:
Q  17 taggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcatatcttatctccc 116  Q
    ||||||| |||||| ||||| ||||| |||| ||||  ||||  ||||| ||||| || ||| ||| ||  ||||||| | |||||||||| |||||||     
T  4076400 taggataggattagtaataggtttaatttatcctttcctattgatgcaccaaacaccagattaaataagggtatgatagtgttatcatatcctatctcct 4076499  T
Q  117 tatcaagtgcaccaaacggacc 138  Q
    ||||| ||||||||||| ||||    
T  4076500 tatcatgtgcaccaaaccgacc 4076521  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 19806810 - 19806930
Alignment:
Q  17 taggatatgattagaaatagatttaaattattcttttttattagtgca--ctaaacaacaaattgaatcagtatatgataattttatcatatcttatctc 114  Q
    ||||||| |||||||||||| ||||| |||| ||||  ||||  ||||  | ||||| || ||||||| || ||| |||| | |||||||||| ||||||    
T  19806810 taggataggattagaaataggtttaatttatcctttcctattgatgcaaaccaaacaccagattgaataaggataggatagtgttatcatatcctatctc 19806909  T
Q  115 cctatcaagtgcaccaaacgg 135  Q
    | ||||| |||||||||||||    
T  19806910 cttatcatgtgcaccaaacgg 19806930  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 1948819 - 1948757
Alignment:
Q  148 taggttgtacacaatctattatgtcattttaataacatagttttattcttatttttcattacag 211  Q
    ||||| |||| |||| |||||| |||||| | |||||| |||||||||||||||||||||||||    
T  1948819 taggtggtacgcaatatattatatcattt-agtaacattgttttattcttatttttcattacag 1948757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 4950252 - 4950129
Alignment:
Q  17 taggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcatatcttatctccc 116  Q
    ||||||||||||  ||||   ||||||||||  |||| ||||  ||||| ||||| ||||||||| ||  ||| ||||  ||||||||||||||| | |     
T  4950252 taggatatgattgaaaatgagtttaaattatcattttctattgatgcaccaaacatcaaattgaaacaagataggatatgtttatcatatcttattttct 4950153  T
Q  117 tatcaagtgcaccaaacggaccct 140  Q
    ||||| ||||||||||| ||||||    
T  4950152 tatcatgtgcaccaaactgaccct 4950129  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 6 - 133
Target Start/End: Complemental strand, 39644976 - 39644849
Alignment:
Q  6 caaaggatgagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcata 105  Q
    |||||||||||||||||| ||||| |||| | ||||| |||| ||||| |||| | |||| |||||||||||||||  |  |||||||| ||||||||||    
T  39644976 caaaggatgagtaggataggattataaatgggtttaagttatccttttctattggcgcaccaaacaacaaattgaaatatgatatgatagttttatcata 39644877  T
Q  106 tcttatctccctatcaagtgcaccaaac 133  Q
    || | ||| ||||||| |||||||||||    
T  39644876 tcctgtcttcctatcacgtgcaccaaac 39644849  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 45884692 - 45884815
Alignment:
Q  14 gagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcatatcttatct 113  Q
    |||||||||||||||| |||| | |||||||||| | ||  || | ||||||||||||||| |||||||||  ||||||||||||||||||||| | | |    
T  45884692 gagtaggatatgattaaaaatggttttaaattatccattcatactggtgcactaaacaacatattgaatcaagatatgataattttatcatatcctgttt 45884791  T
Q  114 ccctatcaagtgcaccaaacggac 137  Q
     ||||||| ||||||| |||||||    
T  45884792 tcctatcatgtgcaccgaacggac 45884815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 41482463 - 41482592
Alignment:
Q  6 caaaggatgagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcata 105  Q
    |||||| ||||||||||||||||| |||||| ||||| |||| ||||  | || |||||| ||||| |  ||| |||||| | |||||| ||||||| ||    
T  41482463 caaagggtgagtaggatatgattaaaaataggtttaagttatcctttcctgttggtgcaccaaacagcgcattaaatcaggagatgatagttttatccta 41482562  T
Q  106 tcttatctccctatcaagtgcaccaaacgg 135  Q
    || | ||| ||||||| |||||||||||||    
T  41482563 tcatgtcttcctatcatgtgcaccaaacgg 41482592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 140
Target Start/End: Complemental strand, 24429762 - 24429627
Alignment:
Q  6 caaaggatgagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtata-tgataattttatcat 104  Q
    |||||| |||||| |||| ||||| |||||| ||||||||||  |||| |||| |||||  || || || | |||||||| ||| ||||| |||||||||    
T  24429762 caaagggtgagtaagataggattataaatagttttaaattatcattttctattggtgcatcaagcagcagaatgaatcaggataatgatagttttatcat 24429663  T
Q  105 atcttatctccctatcaagtgcaccaaacggaccct 140  Q
    || |  ||| ||||||  ||||||||||| ||||||    
T  24429662 atttcgtcttcctatcttgtgcaccaaacagaccct 24429627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 19181457 - 19181588
Alignment:
Q  7 aaaggatgagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcatat 106  Q
    ||||||||||||||||| |||||||||||| ||||| ||||  | |  | || |||||| |||||| | |||| ||||| ||| ||||||||||||||||    
T  19181457 aaaggatgagtaggataggattagaaataggtttaatttatcatatcatgttggtgcaccaaacaatagattggatcaggataggataattttatcatat 19181556  T
Q  107 cttatctccctatcaagtgcaccaaacggacc 138  Q
    | | |||| |||||| ||||||||||||||||    
T  19181557 catgtctctctatcatgtgcaccaaacggacc 19181588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 45413824 - 45413949
Alignment:
Q  17 taggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcatatcttatctccc 116  Q
    ||||||| |||  ||||||| ||||| |||| ||||  |||| |||||| |||||||  |||||||||  |||||||| || |||| |||| | ||||||    
T  45413824 taggataggataggaaataggtttaatttatcctttcctattggtgcaccaaacaaccgattgaatcaagatatgatagttctatcctatcctgtctccc 45413923  T
Q  117 tatcaagtgcaccaaacggaccctca 142  Q
    ||||||||||||||||||||||||||    
T  45413924 tatcaagtgcaccaaacggaccctca 45413949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 32529420 - 32529549
Alignment:
Q  7 aaaggatgagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaa-tcag-tatatgataattttatcat 104  Q
    ||||||||| || ||||||||||||||||  ||||| ||||||||||||||| |||||| ||||| |  |||||| | || ||||||||| |||||||||    
T  32529420 aaaggatgaataagatatgattagaaataagtttaatttattcttttttattggtgcaccaaacagcggattgaagtaagatatatgatagttttatcat 32529519  T
Q  105 atcttatctccctatcaagtgcaccaaacg 134  Q
    ||||| ||| | ||||| ||||| ||||||    
T  32529520 atcttgtcttcttatcatgtgcatcaaacg 32529549  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 32794946 - 32795018
Alignment:
Q  26 attagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattt 98  Q
    |||||||||| |||||||||||  |||||||||||||||| || ||||||||| |||||| ||||||||||||    
T  32794946 attagaaataaatttaaattatcattttttattagtgcaccaaccaacaaattaaatcaggatatgataattt 32795018  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 120
Target Start/End: Original strand, 41865858 - 41865891
Alignment:
Q  87 atatgataattttatcatatcttatctccctatc 120  Q
    ||||||||||||||||||||||||||||||||||    
T  41865858 atatgataattttatcatatcttatctccctatc 41865891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 135
Target Start/End: Complemental strand, 556851 - 556722
Alignment:
Q  6 caaaggatgagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcata 105  Q
    |||||| ||| |||||||||||||||||||| ||||| ||||  |||| ||||  ||||| ||||| |   ||| ||||| |||||||   |||||||||    
T  556851 caaagggtgaataggatatgattagaaataggtttaatttatcattttctattgttgcacgaaacagcggtttggatcaggatatgattggtttatcata 556752  T
Q  106 tcttatctccctatcaagtgcaccaaacgg 135  Q
    || ||||||| ||||| ||||| |||||||    
T  556751 tcctatctccttatcatgtgcatcaaacgg 556722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 38503885 - 38503985
Alignment:
Q  6 caaaggatgagtaggatatgattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcata 105  Q
    |||||| ||||||||||| | |||||| |   ||||| |||||||||  | || |||||| ||||||||||||||| ||| |||||||| ||||||| ||    
T  38503885 caaagggtgagtaggatagggttagaagtgagtttaagttattctttcct-ttggtgcaccaaacaacaaattgaaacaggatatgatagttttatccta 38503983  T
Q  106 tc 107  Q
    ||    
T  38503984 tc 38503985  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 31799978 - 31800065
Alignment:
Q  25 gattagaaatagatttaaattattcttttttattagtgcactaaacaacaaattgaatcagtatatgataattttatcatatcttatct 113  Q
    |||||||||||| ||||| ||||| |||||||||  ||||  ||| |||||||||||| |  |||  |||||||||||| |||||||||    
T  31799978 gattagaaatag-tttaatttattattttttattgatgcatcaaataacaaattgaattaagataatataattttatcacatcttatct 31800065  T

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