View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13990_low_6 (Length: 367)
Name: NF13990_low_6
Description: NF13990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13990_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 26095377 - 26095028
Alignment:
| Q |
1 |
tcccattacaacagatttagggttaattgccacaccttatgactatggagcagggggaataacaacaactgaaccactccaaccagggctcgtttatgaa |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26095377 |
tcccattgcaacagatttagggttaattgccacaccttatgactatggagctggggggataacaacaactgaaccactccaaccagggctcgtttatgaa |
26095278 |
T |
|
| Q |
101 |
accagcaccattgactacttgaactacttgtgttacataggatataacacaaccaccattaaggttatttcaaaaactgtccctgatagtttcaactgcc |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26095277 |
accagcaccattgactacttgaacttcttgtgttatataggatataacacaaccaccattaaggttatttcaaaaactgtccctgatagtttcaactgcc |
26095178 |
T |
|
| Q |
201 |
ctaaggattcgacgcgtgatcatatttccaatatcaattacccttccatcgcaatctctaacttcggtgggaaaagatcggtgaatgtgagtagaattgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
26095177 |
ctaaggattcgacgcgtgatcatatttccaatatcaattacccttccatcgcaatctctaacttcggtgggaaaggatcggtgaatgtcagtagaattgt |
26095078 |
T |
|
| Q |
301 |
tacaaacgtcggtgaagaggaggaaatagtctactcagccgtcgtcaatg |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26095077 |
tacaaacgtcggtgaagaggaggaaatagtctactcagccgtcgtcaatg |
26095028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 53430990 - 53430646
Alignment:
| Q |
1 |
tcccattacaacagatttagggttaattgccacaccttatgactatggagcagggggaataacaacaactgaaccactccaaccagggctcgtttatgaa |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |||||||| || || |||||| || ||||||||| |
|
|
| T |
53430990 |
tcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaataacaccaactgaatcataccgaccaggtcttgtttatgaa |
53430891 |
T |
|
| Q |
101 |
accagcaccattgactacttgaactacttgtgttacataggatataacacaaccaccattaaggttatttcaaaaactgtccctgatagtttcaactgcc |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
53430890 |
accagcaccattgactacttgaacttcttgtgttacataggatataacacaacaactattaaggttatttcaaaaactgtccctgataatttcaactgcc |
53430791 |
T |
|
| Q |
201 |
ctaaggattcgacgcgtgatcatatttccaatatcaattacccttccatcgcaatctctaacttcggtgggaaaagatcggtgaatgtgagtagaattgt |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||||| ||||| | || |||||||| ||||||| ||| |
|
|
| T |
53430790 |
ctaaggattcgactcgtgatcatatttccaatattaattacccttccatagcaatctccaacttcactgggataggaagtgtgaatgtaagtagaactgt |
53430691 |
T |
|
| Q |
301 |
tacaaacgtcggtgaagaggaggaaatagtctactcagccgtcgt |
345 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||| ||| |||| |
|
|
| T |
53430690 |
tacaaacgtcggtgaagaggatgaaacagtctactccgccatcgt |
53430646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 48374826 - 48375161
Alignment:
| Q |
1 |
tcccattacaacagatttagggttaattgccacaccttatgactatggagcagggggaataacaacaactgaaccactccaaccagggctcgtttatgaa |
100 |
Q |
| |
|
||||||||| ||||||||||||| | |||||||||||||||||||||||||||||| |||||||||| |||| || |||||||||| |||||||||||| |
|
|
| T |
48374826 |
tcccattactacagatttagggtcagttgccacaccttatgactatggagcaggggacataacaacaattgaatcattccaaccaggtctcgtttatgaa |
48374925 |
T |
|
| Q |
101 |
accagcaccattgactacttgaactacttgtgttacataggatataacacaaccaccattaaggttatttcaaaaactgtccctgatagtttcaactgcc |
200 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48374926 |
actagcaccattgactacttgaattacttgtgttacataggatacaacacaaccactattaaggttatttcaaaaactgtccctgatactttcaactgcc |
48375025 |
T |
|
| Q |
201 |
ctaaggattcgacgcgtgatcatatttccaatatcaattacccttccatcgcaatctctaacttcggtgggaaaagatcggtgaatgtgagtagaattgt |
300 |
Q |
| |
|
| ||||| || || | |||||||||||||||||||||||| |||||||| ||||| || |||||| ||||||| | | |||||||||||||||| ||| |
|
|
| T |
48375026 |
ccaaggaatcaactcctgatcatatttccaatatcaattatccttccatagcaatttccaacttcactgggaaagaaactgtgaatgtgagtagaactgt |
48375125 |
T |
|
| Q |
301 |
tacaaacgtcggtgaagaggaggaaatagtctactc |
336 |
Q |
| |
|
||||||||| || |||||||| ||| ||| |||||| |
|
|
| T |
48375126 |
tacaaacgttggcgaagaggatgaagtagcctactc |
48375161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 53423028 - 53422683
Alignment:
| Q |
1 |
tcccattacaacagatttagggttaattgccacaccttatgactatggagcagggggaataacaacaactgaaccactccaaccagggctcgtttatgaa |
100 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||| |||| | ||||| || ||||||||||||| ||||||||| |
|
|
| T |
53423028 |
tcccattacaacggatttagggtcaattgccacaccttatgactatggagcaggggaaattacaatatctgaatcattccaaccagggctagtttatgaa |
53422929 |
T |
|
| Q |
101 |
accagcaccattgactacttgaactacttgtgttacataggatataacacaa-ccaccattaaggttatttcaaaaactgtccctgatagtttcaactgc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| || |||| |||| ||||||| ||| |||||||| ||||||| |||||||| ||| |
|
|
| T |
53422928 |
accagcaccattgactacttgaactacttgtgttacctaggatacaatacaacccacaattaaggctatctcaaaaaccgtccctggtagtttcagttgc |
53422829 |
T |
|
| Q |
200 |
cctaaggattcgacgcgtgatcatatttccaatatcaattacccttccatcgcaatctctaacttcggtgggaaaagatcggtgaatgtgagtagaattg |
299 |
Q |
| |
|
||||||||||| || | ||||||||||||||||||||| || ||||| || |||||||| |||||| ||||| | || |||||||||||||||| || |
|
|
| T |
53422828 |
cctaaggattcaactcctgatcatatttccaatatcaactatccttcaatagcaatctccaacttcactgggagaggaagtgtgaatgtgagtagaactg |
53422729 |
T |
|
| Q |
300 |
ttacaaacgtcggtgaagaggaggaaatagtctactcagccgtcgt |
345 |
Q |
| |
|
||||||| || ||||||||||| |||| ||||||||| ||| |||| |
|
|
| T |
53422728 |
ttacaaatgttggtgaagaggatgaaacagtctactccgccatcgt |
53422683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 53307830 - 53307497
Alignment:
| Q |
1 |
tcccattacaacagatttagggttaattgccacaccttatgactatggagcagggggaataacaacaactgaaccactccaaccagggctcgtttatgaa |
100 |
Q |
| |
|
||||||||| || |||| |||| |||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
53307830 |
tcccattaccacgaatttggggtcaattgccacaccttatgactatggagcaggagaaataacaacaactgaaccattccaacccgggctagtttatgaa |
53307731 |
T |
|
| Q |
101 |
accagcaccattgactacttgaactacttgtgttacataggatataacacaaccaccattaaggttatttcaaaaactgtccctgatagtttcaactgcc |
200 |
Q |
| |
|
|| ||||||||||||||| | |||||||||||||||||||||| || |||||||| | ||| |||| || ||||| | |||||||||||||||||||| |
|
|
| T |
53307730 |
actagcaccattgactacctaaactacttgtgttacataggattgaatacaaccacggtgaagattatctctaaaaccgcccctgatagtttcaactgcc |
53307631 |
T |
|
| Q |
201 |
ctaaggattcgacgcgtgatcatatttccaatatcaattacccttccatcgcaatctctaacttcggtgggaaaagatcggtgaatgtgagtagaattgt |
300 |
Q |
| |
|
| |||||||| || ||||||| | || || ||||| ||||||||||| |||||||| |||||| ||| ||| | | ||||||||| |||||||| |
|
|
| T |
53307630 |
ccaaggattcaactattgatcatgtctcgaacatcaactacccttccatagcaatctccaacttcattggtaaagaaacaaagaatgtgagcagaattgt |
53307531 |
T |
|
| Q |
301 |
tacaaacgtcggtgaagaggaggaaatagtctac |
334 |
Q |
| |
|
||||| |||||||||||||| |||||||||||| |
|
|
| T |
53307530 |
cacaaaagtcggtgaagaggatgaaatagtctac |
53307497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University