View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13990_low_9 (Length: 313)
Name: NF13990_low_9
Description: NF13990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13990_low_9 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 15 - 313
Target Start/End: Original strand, 25527232 - 25527530
Alignment:
| Q |
15 |
aagtggcactcacaacaccatggtggtaatatggacaccttatcttaagctcatcaataaactcattagccttatccaaatttcccagttgagaacaagc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25527232 |
aagtggcactcacaacaccatggtggtaatatggacaccttatcttaagctcatcaataaactcattagccttatccaaatttcccagttgagaacaagc |
25527331 |
T |
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| Q |
115 |
caatgtcagattattatacaccgaggaatcggtatgacccgagtctaataacatctcaaaccaaatgtcactggcgtcctcaatacgaccagcattgatc |
214 |
Q |
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| T |
25527332 |
caatgtcagattattatacaccgaggaatcggtatgacccgagtctaataacatctcaaaccaaatgtcactggcgtcctcaatacgaccagcattgatc |
25527431 |
T |
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| Q |
215 |
atacatttggtgataatctgatagttaaccagtgagggtttgatagatgcatcagccttcattttccgaaaaacatcgagggccgcatcaatgcagccc |
313 |
Q |
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| T |
25527432 |
atacatttggtgataatctgataggtaaccagtgagggtttgatagatgcatcagccttcattttccgaaaaacatcgagggccgcatcaatgcagccc |
25527530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 162 - 313
Target Start/End: Complemental strand, 25515033 - 25514882
Alignment:
| Q |
162 |
ataacatctcaaaccaaatgtcactggcgtcctcaatacgaccagcattgatcatacatttggtgataatctgatagttaaccagtgagggtttgataga |
261 |
Q |
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| T |
25515033 |
ataacatcttaaacaagatgtcacgggcatcttcaatacgaccagcactgatcaaagctttggtgataatctgataggtaaccggtgagggtttgataga |
25514934 |
T |
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| Q |
262 |
tgcatcagccttcattttccgaaaaacatcgagggccgcatcaatgcagccc |
313 |
Q |
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| T |
25514933 |
tgcatcggccttcattttccgaaaaacatcgagagccgcgtcaatgcggccc |
25514882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 57 - 313
Target Start/End: Original strand, 25535306 - 25535559
Alignment:
| Q |
57 |
tcttaagctcatcaataaactcattagccttatccaaatttcccagttgagaacaagccaatgtcagattattatacaccgaggaatcggtatgacccga |
156 |
Q |
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|||||||||||||||||| ||||||||| ||||| | ||||||||||||| |||||| || | | |||| |||||| | | |||| | ||| |||| |
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| T |
25535306 |
tcttaagctcatcaataagctcattagctttatcaacatttcccagttgaatacaagcagatatgatattagcatacacagtgaaatccgcatggcccgt |
25535405 |
T |
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| Q |
157 |
gtctaataacatctcaaaccaaatgtcactggcgtcctcaatacgaccagcattgatcatacatttggtgataatctgatagttaaccagtgagggtttg |
256 |
Q |
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| T |
25535406 |
gt---ataacatcttaaccaagatgtcacgggcatcctcaatacgaccagcactgatcaaacatttggtgataatgcggtaagtaacgggtgagggtttg |
25535502 |
T |
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| Q |
257 |
atagatgcatcagccttcattttccgaaaaacatcgagggccgcatcaatgcagccc |
313 |
Q |
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| T |
25535503 |
atagatgcatcggccttcattttccgaaaaacatcgagagccgcgtcaatgcggccc |
25535559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 25515181 - 25515099
Alignment:
| Q |
15 |
aagtggcactcacaacaccatggtggtaatatggacaccttatcttaagctcatcaataaactcattagccttatccaaattt |
97 |
Q |
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| T |
25515181 |
aagtggcactcacaacgccgttgtaataattcggacaccacctcttaaggtcatcaataagctcattagccttatcaaaattt |
25515099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 43223747 - 43223700
Alignment:
| Q |
49 |
acaccttatcttaagctcatcaataaactcattagccttatccaaatt |
96 |
Q |
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| T |
43223747 |
acaccttcccttaagctcatcaaaaagctcattagccttatccaaatt |
43223700 |
T |
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