View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13991_high_2 (Length: 439)
Name: NF13991_high_2
Description: NF13991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13991_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 13 - 437
Target Start/End: Original strand, 14926725 - 14927149
Alignment:
| Q |
13 |
ttcatttcattttgcaggaaatgatcacttctagctctggccatcctccccaaagagtctgtcatctaattgtccaaaatttaatttcttttaataactt |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14926725 |
ttcaattcattttgcaggaaatgatcacttctagctctgtccatcctccccaaagagtctgtcatctaattgtccaaaatttaatttcttttaataactt |
14926824 |
T |
|
| Q |
113 |
catttatgccataccactttctttaacaatgttattatactgatttgcttcaaaattttctcctacataacaggagaagaagttcttatatgatattgtt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14926825 |
catttatgccataccactttctttaacaatgttattatactgatttgcttcaaaattttctcctacataacaggagaagaagttcttatatgatattgtt |
14926924 |
T |
|
| Q |
213 |
gcaaacggtcgcaatggaattgacgttgacaagtaagttgatacttttcaccttttttcctcctgatgtgccactattattgataccgaatcttgtgatc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
14926925 |
gcaaacggtcgcaatggaattgacgttgacaagtaagttgatacttttcaccttttttcctcctgatgtgccactgttattgataccgaatctcgtgatc |
14927024 |
T |
|
| Q |
313 |
atagaaccataacaaattcaagaatttgcagatttgactacattgttcgtgattcacgtgcttgtggcctagggtgcaactttcagccagagaggtgttc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14927025 |
atagaaccataacaaattcaagaatttgcagatttgactacattgttcgtgattcacgtgcttgtggcctagggtgcaactttcagccagagaggtgttc |
14927124 |
T |
|
| Q |
413 |
atttttattatctaggtggcattat |
437 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
14927125 |
atttttattatctaggtcgcattat |
14927149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 1528297 - 1528352
Alignment:
| Q |
195 |
ttcttatatgatattgttgcaaacggtcgcaatggaattgacgttgacaagtaagt |
250 |
Q |
| |
|
||||| ||||||||||||||||| || || |||||||| || |||||||||||||| |
|
|
| T |
1528297 |
ttcttgtatgatattgttgcaaatggacgaaatggaatcgatgttgacaagtaagt |
1528352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University