View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13991_high_3 (Length: 401)
Name: NF13991_high_3
Description: NF13991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13991_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 37610515 - 37610148
Alignment:
| Q |
18 |
caacaattaaaacaatcctcaaaatcacattaactagttttcatttcaaacaatgatattgatacattaccacagcattgaaggtgtaacgctgaacacc |
117 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37610515 |
caacaattaaaataatcctcaaaaacacattaactagtttttatttcaaacaatgatattgatacattaccacagcattgaaggtgtaacgctgaacacc |
37610416 |
T |
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| Q |
118 |
tttccagtcatcaacatcataggcagtgtagtgtttgcaacaagcagcaaccttaagcttgtttgagtctccatcatcagtttgttgtagacctttcaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37610415 |
tttccagtcatcaacatcataggcagtgtagtgtttgcaacaagcagcaaccttaagcttgtttgagtctccatcatcagtttgttgtagacctttcaca |
37610316 |
T |
|
| Q |
218 |
taccctgctgcatatttgctagcaagtaaagggtcttctcctggtgtttcttgacctcttccccatcttggatccctaaatatgttaatgtttggtgacc |
317 |
Q |
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| T |
37610315 |
taccctgctgcatatttgctagcaagtaaagggtcttctcctggtgtttcttgacctcttccccatcttggatccctaaatatgttaatgtttggtgacc |
37610216 |
T |
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| Q |
318 |
aatatgttaaaccagctaaccctacattgtgcattgctcttgcttccgtcgaaaccacctacacatat |
385 |
Q |
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| T |
37610215 |
aatatgttaaaccagctaaccctacattgtgcattgctcttgcttccgtcgaaaccacctacacatat |
37610148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 84 - 377
Target Start/End: Original strand, 1370032 - 1370325
Alignment:
| Q |
84 |
ttaccacagcattgaaggtgtaacgctgaacacctttccagtcatcaacatcataggcagtgtagtgtttgcaacaagcagcaaccttaagcttgtttga |
183 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| | |||||||||||| || ||||||||||||||||||||||||||||||||||||| || |
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| T |
1370032 |
ttaccacagcatcgaaggtgtaacgctgaacacctttccaattatcaacatcataagctgtgtagtgtttgcaacaagcagcaaccttaagcttgtcgga |
1370131 |
T |
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| Q |
184 |
gtctccatcatcagtttgttgtagacctttcacataccctgctgcatatttgctagcaagtaaagggtcttctcctggtgtttcttgacctcttccccat |
283 |
Q |
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||||||||||||||||||||| | |||||||||||| |||||||||||||||||| | ||||||||||| |||||||||||||| || ||||||||| |
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| T |
1370132 |
gtctccatcatcagtttgttgcaaacctttcacatatcctgctgcatatttgctacttaacaaagggtcttcacctggtgtttcttgtccccttccccat |
1370231 |
T |
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| Q |
284 |
cttggatccctaaatatgttaatgtttggtgaccaatatgttaaaccagctaaccctacattgtgcattgctcttgcttccgtcgaaaccacct |
377 |
Q |
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| T |
1370232 |
cttggatctctgaatatgttaatgtttggtgaccaatatgtcaaaccggccaaccctacattgtacattgctcttgcttcatttgaaaccacct |
1370325 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 13300643 - 13300585
Alignment:
| Q |
113 |
acacctttccagtcatcaacatcataggcagtgtagtgtttgcaacaagcagcaacctt |
171 |
Q |
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| T |
13300643 |
acaccattccagttatcaagatcataggcagtgtaatgtttacaacaagcagcaacctt |
13300585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 319
Target Start/End: Original strand, 25887905 - 25887979
Alignment:
| Q |
245 |
aaagggtcttctcctggtgtttcttgacctcttccccatcttggatccctaaatatgttaatgtttggtgaccaa |
319 |
Q |
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| T |
25887905 |
aaaggatcttcaccagctgtttcttgtcctcttccccatcttgggtccctaaatatgtttatgtttggtgcccaa |
25887979 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 319
Target Start/End: Original strand, 25928351 - 25928425
Alignment:
| Q |
245 |
aaagggtcttctcctggtgtttcttgacctcttccccatcttggatccctaaatatgttaatgtttggtgaccaa |
319 |
Q |
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| T |
25928351 |
aaaggatcttcaccagctgtttcttgtcctcttccccatcttgggtccctaaatatgtttatgtttggtgcccaa |
25928425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 324
Target Start/End: Complemental strand, 25957270 - 25957191
Alignment:
| Q |
245 |
aaagggtcttctcctggtgtttcttgacctcttccccatcttggatccctaaatatgttaatgtttggtgaccaatatgt |
324 |
Q |
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| T |
25957270 |
aaaggatcttcaccagctgtctcttgccctcttccccatcttgggtccctaaatatgtttatgtttggtgcccaaaatgt |
25957191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 319
Target Start/End: Original strand, 25910512 - 25910586
Alignment:
| Q |
245 |
aaagggtcttctcctggtgtttcttgacctcttccccatcttggatccctaaatatgttaatgtttggtgaccaa |
319 |
Q |
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||||| ||||| || | ||||||||| ||||||||||||||||| ||||| |||||||| |||||||||| |||| |
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| T |
25910512 |
aaaggatcttcaccagctgtttcttgtcctcttccccatcttgggtccctgaatatgtttatgtttggtgcccaa |
25910586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 33423663 - 33423725
Alignment:
| Q |
262 |
tgtttcttgacctcttccccatcttggatccctaaatatgttaatgtttggtgaccaatatgt |
324 |
Q |
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| T |
33423663 |
tgtttcttgtcctctcccccatcttggatccctgaatatgtttatgtttggtgcccaaaatgt |
33423725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 44718122 - 44718189
Alignment:
| Q |
113 |
acacctttccagtcatcaacatcataggcagtgtagtgtttgcaacaagcagcaaccttaagcttgtt |
180 |
Q |
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| T |
44718122 |
acaccattccaattatcaacatcataagctgtgaagtgtttgcaacaagcagctaccttcaacttgtt |
44718189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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