View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13991_high_7 (Length: 239)
Name: NF13991_high_7
Description: NF13991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13991_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 32782549 - 32782330
Alignment:
| Q |
1 |
caactggctacttggggagcctaacaactttcagcggctggaatcagaaaatgctcgagcttagtgtcgctggacactggatcttgtcttttcttggctt |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32782549 |
caaccggctacttggggagcctaacaactttcagcggctggaatcagaaaatgctcgagcttggtgtcgctggacactggatcttgtcttttcttggctt |
32782450 |
T |
|
| Q |
101 |
tctaataggtaataagtgcaatttaaagactatgtattaacaagacaaaatagttttgcatacatgtttaggtatatgtcacttaaccaaattactttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32782449 |
tctaataggtaataagtgcaatttaaagactatgtactaacaagacaaaatagttttgcatacatgtttaggtatatgttacttaaccaaattactttct |
32782350 |
T |
|
| Q |
201 |
aaaatatctgtgcaattatc |
220 |
Q |
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|||||||||||||||||||| |
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| T |
32782349 |
aaaatatctgtgcaattatc |
32782330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 1034767 - 1034879
Alignment:
| Q |
1 |
caactggctacttggggagcctaacaactttcagcggctggaatcagaaaatgctcgagcttagtgtcgctggacactggatcttgtcttttcttggctt |
100 |
Q |
| |
|
||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||| || || ||||| |||| | ||| |||| | | |||||||| |
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| T |
1034767 |
caactggttacttagggagtctaacaacattcagcggctggaatcagaaaatgcttgaactcagtgttactgggaattggctctttgttgtgcttggctt |
1034866 |
T |
|
| Q |
101 |
tctaataggtaat |
113 |
Q |
| |
|
||||||||||||| |
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|
| T |
1034867 |
tctaataggtaat |
1034879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 32778088 - 32777976
Alignment:
| Q |
1 |
caactggctacttggggagcctaacaactttcagcggctggaatcagaaaatgctcgagcttagtgtcgctggacactggatcttgtcttttcttggctt |
100 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||| || |||||||| |||||||| || || |||| | || |||||| || | |||| |||||||| |
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| T |
32778088 |
caactggttacttggggagccttacaaccttcagtggttggaatcaaaaaatgcttgaactcagtgcttccggccactgggtcatctcttcacttggctt |
32777989 |
T |
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| Q |
101 |
tctaataggtaat |
113 |
Q |
| |
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||||||||||||| |
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|
| T |
32777988 |
tctaataggtaat |
32777976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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