View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13991_low_1 (Length: 480)

Name: NF13991_low_1
Description: NF13991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13991_low_1
NF13991_low_1
[»] chr6 (18 HSPs)
chr6 (64-398)||(32960599-32960933)
chr6 (73-330)||(29124094-29124351)
chr6 (78-341)||(29152009-29152272)
chr6 (89-357)||(34281837-34282105)
chr6 (73-330)||(32744735-32744992)
chr6 (78-331)||(34278327-34278580)
chr6 (73-337)||(29012771-29013035)
chr6 (73-331)||(29137227-29137485)
chr6 (107-330)||(29131254-29131477)
chr6 (73-397)||(29145178-29145499)
chr6 (107-280)||(32740623-32740796)
chr6 (73-331)||(29300023-29300281)
chr6 (72-358)||(34258128-34258414)
chr6 (396-463)||(32960957-32961015)
chr6 (78-199)||(25319201-25319322)
chr6 (78-199)||(26148894-26149015)
chr6 (81-204)||(25519875-25519998)
chr6 (399-464)||(32745084-32745149)
[»] chr4 (8 HSPs)
chr4 (79-357)||(54294961-54295239)
chr4 (117-331)||(9581901-9582115)
chr4 (117-331)||(9587596-9587810)
chr4 (209-354)||(37897867-37898012)
chr4 (125-338)||(9569130-9569343)
chr4 (117-336)||(9593694-9593913)
chr4 (173-339)||(9602559-9602725)
chr4 (192-270)||(20426618-20426696)
[»] scaffold0054 (3 HSPs)
scaffold0054 (73-273)||(39693-39893)
scaffold0054 (73-273)||(33342-33542)
scaffold0054 (335-398)||(39955-40015)
[»] scaffold0134 (1 HSPs)
scaffold0134 (109-357)||(16136-16384)
[»] scaffold0613 (1 HSPs)
scaffold0613 (109-357)||(116-364)
[»] chr7 (4 HSPs)
chr7 (73-257)||(42446356-42446540)
chr7 (80-357)||(7793739-7794016)
chr7 (211-268)||(5438313-5438370)
chr7 (211-268)||(5447289-5447346)
[»] chr8 (1 HSPs)
chr8 (138-264)||(26607069-26607195)
[»] chr5 (8 HSPs)
chr5 (201-257)||(40549288-40549344)
chr5 (167-267)||(42629597-42629697)
chr5 (200-272)||(43322796-43322868)
chr5 (143-270)||(42564914-42565041)
chr5 (209-267)||(31789523-31789581)
chr5 (88-233)||(32642992-32643134)
chr5 (161-267)||(37512898-37513004)
chr5 (209-270)||(42637359-42637420)
[»] chr2 (2 HSPs)
chr2 (138-270)||(7488692-7488824)
chr2 (196-270)||(44937793-44937867)
[»] chr1 (2 HSPs)
chr1 (162-270)||(368801-368909)
chr1 (161-270)||(361883-361992)
[»] chr3 (1 HSPs)
chr3 (209-257)||(5162463-5162511)


Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 64 - 398
Target Start/End: Original strand, 32960599 - 32960933
Alignment:
Q  64 aatatcccgtttaaaaccaagcttctcaataatttgggaactcaaatcaaacaaaactaattcttaatcttttattatgaagaatatttcccccttattc 163  Q
    ||||||||||||||||||||||||| |||| ||||||| || ||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||    
T  32960599 aatatcccgtttaaaaccaagcttcacaatcatttgggtacccaaatcaaacaaaactaattcttcatcttttcttatgaagaatatttcccccttcttc 32960698  T
Q  164 cctactcccataggacgctcaacacaaggcaatggtccaacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaa 263  Q
    || |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  32960699 cccactcccataggacgctcaacacaaggcaatggtctaacaataaagagtttgatccaagattccttcataccgatttcatccaaaattgatacatgaa 32960798  T
Q  264 aagtagtagtttcttcaatatatgagaacaatgcaatagacccagttaacactgccaagtttatccacgatgctttaaatttaaaacaatcatcatcttc 363  Q
    ||||||| || |||||||| | ||||||||||||||| |||||| ||| ||| |||||||||||||| |||||||||||||||| |||||||||||||||    
T  32960799 aagtagtcgtctcttcaatgtgtgagaacaatgcaatggacccatttagcaccgccaagtttatccatgatgctttaaatttaatacaatcatcatcttc 32960898  T
Q  364 atctgagtgtatgggtgttacaaggaacacctcat 398  Q
    ||| |||||||||||||||||||||||||||||||    
T  32960899 atccgagtgtatgggtgttacaaggaacacctcat 32960933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 73 - 330
Target Start/End: Complemental strand, 29124351 - 29124094
Alignment:
Q  73 tttaaaaccaagcttctcaataatttgggaactcaaatcaaacaaaactaattcttaatcttttattatgaagaatatttcccccttattccctactccc 172  Q
    |||||||||||||| |||||| ||||||| ||||||||||||| || ||| ||||| ||||||| | ||||||||||||||||||||  | || |||||     
T  29124351 tttaaaaccaagctcctcaatcatttgggtactcaaatcaaaccaagctagttctttatcttttctaatgaagaatatttcccccttcatacccactcca 29124252  T
Q  173 ataggacgctcaacacaaggcaatggtccaacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagtag 272  Q
    |||||||| |||||||||||||||||||| | |   ||||| ||| |||| |||| |||||||||||| ||||||| ||||||||  |||||||||||      
T  29124251 ataggacgatcaacacaaggcaatggtcccatagtgaagagcttggtccatgattccttcataccgatctcacccagaattgatatctgaaaagtagtct 29124152  T
Q  273 tttcttcaatatatgagaacaatgcaatagacccagttaacactgccaagtttatcca 330  Q
    | | ||||  |||||||||||||||||| | |||| ||||||||||||||||| ||||    
T  29124151 tcttttcatgatatgagaacaatgcaatggtcccatttaacactgccaagtttctcca 29124094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 78 - 341
Target Start/End: Original strand, 29152009 - 29152272
Alignment:
Q  78 aaccaagcttctcaataatttgggaactcaaatcaaacaaaactaattcttaatcttttattatgaagaatatttcccccttattccctactcccatagg 177  Q
    ||||||||| |||||| ||||| | ||||| ||||||| || ||| ||||| ||||||| |||| |||||||||||||| || ||||| ||||| |||||    
T  29152009 aaccaagctcctcaatcatttgagtactcagatcaaaccaagctacttctttatcttttcttataaagaatatttccccatttttccccactccgatagg 29152108  T
Q  178 acgctcaacacaaggcaatggtccaacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagtagtttct 277  Q
    |||||||||  ||||||| |||||||| |  |||||||||||||| ||||   | | ||||| || |||||||||||||||| |||||||||| || |||    
T  29152109 acgctcaacgtaaggcaacggtccaaccatgaagagtttgatccacgattctctgaaaccgagttgacccaaaattgatacacgaaaagtagtcgtctct 29152208  T
Q  278 tcaatatatgagaacaatgcaatagacccagttaacactgccaagtttatccacgatgctttaa 341  Q
    ||| ||||||||| |||||| || |||||| |||||||  ||||||||||||||  ||||||||    
T  29152209 tcattatatgagatcaatgctatggacccatttaacacacccaagtttatccactttgctttaa 29152272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 89 - 357
Target Start/End: Complemental strand, 34282105 - 34281837
Alignment:
Q  89 tcaataatttgggaactcaaatcaaacaaaactaattcttaatcttttattatgaagaatatttcccccttattccctactcccataggacgctcaacac 188  Q
    ||||| ||||||| ||||||||||||| || | | ||||| ||||||| ||||||||||||||||||||||  |||| ||||| ||||||||||||||      
T  34282105 tcaatcatttgggtactcaaatcaaaccaagccacttctttatcttttcttatgaagaatatttccccctttgtccccactccgataggacgctcaacgt 34282006  T
Q  189 aaggcaatggtccaacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagtagtttcttcaatatatga 288  Q
    ||||||| |||||||| | ||||||||||||||| ||||  || | ||||| || |||||||||||||||| |||||||| | || |||| |  ||||||    
T  34282005 aaggcaacggtccaaccataaagagtttgatccacgattctttgaaaccgagttgacccaaaattgatacacgaaaagtacttgtctctttacgatatga 34281906  T
Q  289 gaacaatgcaatagacccagttaacactgccaagtttatccacgatgctttaaatttaaaacaatcatc 357  Q
    || |||||| ||  ||||| |||||||  |||||||| |||||  ||||||||  | ||||||||||||    
T  34281905 gatcaatgctatgtacccatttaacaccaccaagtttttccactttgctttaacatcaaaacaatcatc 34281837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 73 - 330
Target Start/End: Original strand, 32744735 - 32744992
Alignment:
Q  73 tttaaaaccaagcttctcaataatttgggaactcaaatcaaacaaaactaattcttaatcttttattatgaagaatatttcccccttattccctactccc 172  Q
    |||||||||||||| |||||| ||||||| ||||||||||||| || | | ||||| ||| ||| ||||||||||||||||||||||  | || |||||     
T  32744735 tttaaaaccaagctcctcaatcatttgggtactcaaatcaaaccaagccagttcttcatcgtttcttatgaagaatatttccccctttgtacccactcca 32744834  T
Q  173 ataggacgctcaacacaaggcaatggtccaacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagtag 272  Q
    ||||| || ||||| |||||||||||||||| |   ||||| ||| |||| ||||  |||||||| || ||||||| ||||||||  ||||||||||| |    
T  32744835 ataggccgatcaacgcaaggcaatggtccaatagtgaagagattggtccatgattctttcataccaatctcacccataattgatatgtgaaaagtagtcg 32744934  T
Q  273 tttcttcaatatatgagaacaatgcaatagacccagttaacactgccaagtttatcca 330  Q
    | | ||||  |||||||| ||||||||| |||||| ||||||| ||||||||| ||||    
T  32744935 tcttttcataatatgagatcaatgcaatggacccatttaacaccgccaagtttctcca 32744992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 78 - 331
Target Start/End: Original strand, 34278327 - 34278580
Alignment:
Q  78 aaccaagcttctcaataatttgggaactcaaatcaaacaaaactaattcttaatcttttattatgaagaatatttcccccttattccctactcccatagg 177  Q
    ||||||||| |||||| || |||  ||||||||||||| || ||| ||||| ||||||||||||||||||||||| ||||||  |||| ||||| |||||    
T  34278327 aaccaagctcctcaatcatatggatactcaaatcaaaccaagctacttctttatcttttattatgaagaatattttcccctttgtccccactccgatagg 34278426  T
Q  178 acgctcaacacaaggcaatggtccaacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagtagtttct 277  Q
    |||||||||  ||||||| |||||||| |  |||||||||||||||||||  || | ||||| || ||||||||| |||||| ||||||||||  | |||    
T  34278427 acgctcaacgtaaggcaacggtccaaccatgaagagtttgatccaagattctttgaaaccgagttgacccaaaatcgatacacgaaaagtagtcatctct 34278526  T
Q  278 tcaatatatgagaacaatgcaatagacccagttaacactgccaagtttatccac 331  Q
    | |  ||||| || |||||| || |||||| |||||||  ||||||||||||||    
T  34278527 ttatgatatgtgatcaatgctatggacccatttaacaccaccaagtttatccac 34278580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 73 - 337
Target Start/End: Complemental strand, 29013035 - 29012771
Alignment:
Q  73 tttaaaaccaagcttctcaataatttgggaactcaaatcaaacaaaactaattcttaatcttttattatgaagaatatttcccccttattccctactccc 172  Q
    |||| |||||| || |||||| ||||||| ||||||||||| | |||||| ||||| ||||||| | |||||||||||||| || ||  |||| |||||     
T  29013035 tttataaccaacctcctcaatcatttgggtactcaaatcaagccaaactagttcttcatcttttctgatgaagaatatttctcctttcgtccccactccg 29012936  T
Q  173 ataggacgctcaacacaaggcaatggtccaacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagtag 272  Q
    |||||||||| ||| |||| ||| ||||||||||  ||||||||| |||| |||| ||||| |||||  || |||||||||||||  |||||| |||| |    
T  29012935 ataggacgcttaacgcaagacaacggtccaacaatgaagagtttggtccatgattccttcacaccgaaatcccccaaaattgatatgtgaaaattagtcg 29012836  T
Q  273 tttcttcaatatatgagaacaatgcaatagacccagttaacactgccaagtttatccacgatgct 337  Q
    | |||| |  |||||||| ||||||||| |||||| |||| || |||||||||| |||| |||||    
T  29012835 tctctttatgatatgagaccaatgcaatggacccatttaataccgccaagtttaaccacaatgct 29012771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 73 - 331
Target Start/End: Complemental strand, 29137485 - 29137227
Alignment:
Q  73 tttaaaaccaagcttctcaataatttgggaactcaaatcaaacaaaactaattcttaatcttttattatgaagaatatttcccccttattccctactccc 172  Q
    |||||||||||||| ||| || ||||||| ||| ||||||||| || ||| ||||| ||||||| || | ||| |||||||||||||  |||| |||||     
T  29137485 tttaaaaccaagctcctcgatcatttgggtacttaaatcaaaccaagctagttctttatcttttcttgtaaaggatatttccccctttgtccccactcca 29137386  T
Q  173 ataggacgctcaacacaaggcaatggtccaacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagtag 272  Q
    | |||||||||||||||||||||||||| |||    |||||  || |||| | || ||||||||| | |||||||||||| ||||||||||||||||       
T  29137385 aaaggacgctcaacacaaggcaatggtctaactgtgaagagcctggtccatgtttccttcataccaacttcacccaaaatagatacatgaaaagtagcca 29137286  T
Q  273 tttcttcaatatatgagaacaatgcaatagacccagttaacactgccaagtttatccac 331  Q
    | | ||||  |||||| | ||||||||| |||  | |||||||  ||||||||||||||    
T  29137285 tcttttcatgatatgatatcaatgcaatggacaaatttaacaccaccaagtttatccac 29137227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 107 - 330
Target Start/End: Complemental strand, 29131477 - 29131254
Alignment:
Q  107 aaatcaaacaaaactaattcttaatcttttattatgaagaatatttcccccttattccctactcccataggacgctcaacacaaggcaatggtccaacaa 206  Q
    ||||||| | |||||| ||||| ||||||| ||| |||||||||||| || ||  |||| ||||| |||||||||||||| | || ||||||||||||||    
T  29131477 aaatcaagccaaactagttcttcatcttttcttaggaagaatatttctccttttgtccccactccaataggacgctcaacgccagacaatggtccaacaa 29131378  T
Q  207 caaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagtagtttcttcaatatatgagaacaatgcaatagaccc 306  Q
      ||||  ||| |||| ||||  || || || | |||||||||||||||||  ||||||||||| ||  |||||  |||||| | ||||||||| ||| |    
T  29131377 tgaagatcttggtccacgattcttttatgccaaattcacccaaaattgatatgtgaaaagtagttgtgccttcatgatatgacatcaatgcaatggacac 29131278  T
Q  307 agttaacactgccaagtttatcca 330  Q
    | | ||||||||||||||||||||    
T  29131277 attcaacactgccaagtttatcca 29131254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 73 - 397
Target Start/End: Complemental strand, 29145499 - 29145178
Alignment:
Q  73 tttaaaaccaagcttctcaataatttgggaactcaaatcaaacaaaactaattcttaatcttttattatgaagaatatttcccccttattccctactccc 172  Q
    |||| ||||||| | ||||||  |||||| ||| | ||||||| | ||||||||||  |||||| ||   |||||||||||||| ||  |||| |||||     
T  29145499 tttataaccaagttcctcaatcttttgggtacttagatcaaaccagactaattcttcgtcttttctttgaaagaatatttccccttttatcccaactccg 29145400  T
Q  173 ataggacgctcaacacaaggcaatggtccaacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagtag 272  Q
    |||||| ||| ||  ||||  | |||||||| || |||||||||| |||| |||| ||||||||| | | |||||||||||||||  |||||| ||||||    
T  29145399 ataggatgcttaatgcaagatagtggtccaagaataaagagtttggtccatgattccttcatacctaatccacccaaaattgatatgtgaaaattagtag 29145300  T
Q  273 tttcttcaatatatgagaacaatgcaatagacccagttaacactgccaagtttatccacgatgctttaaatttaaaacaatcatcatcttcatctgagtg 372  Q
    ||| ||||  |||||||| |||||||||  |  || ||| |||||||| |||||||||| |||||| ||  |  |||||   |||||||   |||||| |    
T  29145299 tttgttcatgatatgagatcaatgcaatgaaatcatttatcactgccaggtttatccacaatgcttcaacatcgaaaca---atcatctaagtctgaggg 29145203  T
Q  373 tatgggtgttacaaggaacacctca 397  Q
    |||||||||||| | ||||||||||    
T  29145202 tatgggtgttactaagaacacctca 29145178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 107 - 280
Target Start/End: Original strand, 32740623 - 32740796
Alignment:
Q  107 aaatcaaacaaaactaattcttaatcttttattatgaagaatatttcccccttattccctactcccataggacgctcaacacaaggcaatggtccaacaa 206  Q
    ||||||| | |||||| ||||| ||||||| ||| |||||||||||| || ||  |||| ||||| |||||||| | ||||| || ||||||||||||||    
T  32740623 aaatcaagccaaactagttcttcatcttttcttaggaagaatatttctcctttcgtccccactccaataggacgttgaacaccagacaatggtccaacaa 32740722  T
Q  207 caaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagtagtttcttca 280  Q
      ||||||||| |||| |||| ||| || |||| ||||||||||||||||||  |||||||||| || ||||||    
T  32740723 tgaagagtttggtccacgattcctttatgccgaattcacccaaaattgatacgagaaaagtagttgtgtcttca 32740796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 73 - 331
Target Start/End: Complemental strand, 29300281 - 29300023
Alignment:
Q  73 tttaaaaccaagcttctcaataatttgggaactcaaatcaaacaaaactaattcttaatcttttattatgaagaatatttcccccttattccctactccc 172  Q
    |||| ||||||||| |||||| ||||| | ||||| ||||||| || ||| |||   ||||||| |||| |||||||||||||||||  |||| | |       
T  29300281 tttataaccaagctgctcaatcatttgcgtactcagatcaaaccaagctacttccatatctttttttataaagaatatttccccctttgtccccattatg 29300182  T
Q  173 ataggacgctcaacacaaggcaatggtccaacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagtag 272  Q
    ||||||||||  || |||| ||| |||||||||   ||||| ||| |||| |||| ||| |||| ||  ||||||||||||||||  ||||||||||| |    
T  29300181 ataggacgctggacgcaagccaacggtccaacattgaagagattggtccacgattcctttatactgagctcacccaaaattgatatgtgaaaagtagtcg 29300082  T
Q  273 tttcttcaatatatgagaacaatgcaatagacccagttaacactgccaagtttatccac 331  Q
    | | ||    | |||||| ||| ||||| |||||| ||||||| |||||||||||||||    
T  29300081 tctttttttgaaatgagatcaaggcaatggacccatttaacacagccaagtttatccac 29300023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 72 - 358
Target Start/End: Original strand, 34258128 - 34258414
Alignment:
Q  72 gtttaaaaccaagcttctcaataatttgggaactcaaatcaaacaaaactaattcttaatcttttattatgaagaatatttcccccttattccctactcc 171  Q
    ||||| || |||||| ||||||  ||||||  ||||||| |||| || ||| || || ||||||| ||||||||||||||||||||||  |||| | |||    
T  34258128 gtttataagcaagctcctcaatcgtttgggtgctcaaattaaaccaagctagttttttatcttttcttatgaagaatatttccccctttgtccccattcc 34258227  T
Q  172 cataggacgctcaacacaaggcaatggtccaacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagta 271  Q
     || ||   || ||| |||| ||  | ||||| ||| ||||||||  |||| ||||  ||||  |||  |||   |||||||||||  |||||||| |||    
T  34258228 aatggggtacttaacgcaagacatcgatccaataacgaagagttttgtccatgattctttcacgccgtgttcgttcaaaattgatatgtgaaaagttgta 34258327  T
Q  272 gtttcttcaatatatgagaacaatgcaatagacccagttaacactgccaagtttatccacgatgctttaaatttaaaacaatcatca 358  Q
    |||| |||| |||||||||  || |||||  ||||| ||||||| |||||||||||||||  ||||||||  | |||||||||||||    
T  34258328 gttttttcattatatgagagtaaggcaatgaacccatttaacaccgccaagtttatccactttgctttaacatcaaaacaatcatca 34258414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 396 - 463
Target Start/End: Original strand, 32960957 - 32961015
Alignment:
Q  396 catggttgaaatgggctattatgtttttctgaaaatccataacttttcttacacaaccaatgacacac 463  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||    
T  32960957 catggttgaaatgggctattatgtttt---------ccataacttttcttacacaaccaatgacacac 32961015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 199
Target Start/End: Original strand, 25319201 - 25319322
Alignment:
Q  78 aaccaagcttctcaataatttgggaactcaaatcaaacaaaactaattcttaatcttttattatgaagaatatttcccccttattccctactcccatagg 177  Q
    |||||||| ||||||| | |||||  |||||||||| | |||||||||| | ||||||| || |||| |||||||||||| |   ||| ||||  || ||    
T  25319201 aaccaagcatctcaatcaattgggtgctcaaatcaagccaaactaattccttatcttttcttttgaaaaatatttcccccgtcaccccaactctaattgg 25319300  T
Q  178 acgctcaacacaaggcaatggt 199  Q
     |||||||||||| ||||||||    
T  25319301 gcgctcaacacaaagcaatggt 25319322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 199
Target Start/End: Original strand, 26148894 - 26149015
Alignment:
Q  78 aaccaagcttctcaataatttgggaactcaaatcaaacaaaactaattcttaatcttttattatgaagaatatttcccccttattccctactcccatagg 177  Q
    |||||||| ||||||| | |||||  |||||||||| | |||||||||| | ||||||| || |||| |||||||||||| |   ||| ||||  || ||    
T  26148894 aaccaagcatctcaatcaattgggtgctcaaatcaagccaaactaattccttatcttttcttttgaaaaatatttcccccgtcaccccaactctaattgg 26148993  T
Q  178 acgctcaacacaaggcaatggt 199  Q
     |||||||||||| ||||||||    
T  26148994 gcgctcaacacaaagcaatggt 26149015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 204
Target Start/End: Original strand, 25519875 - 25519998
Alignment:
Q  81 caagcttctcaataatttgggaactcaaatcaaacaaaactaattcttaatcttttattatgaagaatatttcccccttattccctactcccataggacg 180  Q
    |||||| |||||| ||||| | ||||||||||||| |||||| ||||  ||||||| ||||||| || |||||  ||||  || | |||   ||| ||||    
T  25519875 caagctcctcaatcatttgagcactcaaatcaaaccaaactacttctctatcttttcttatgaataacatttcatcctttgtctccactatgatatgacg 25519974  T
Q  181 ctcaacacaaggcaatggtccaac 204  Q
    ||||||||||| || |||||||||    
T  25519975 ctcaacacaagacactggtccaac 25519998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 464
Target Start/End: Original strand, 32745084 - 32745149
Alignment:
Q  399 ggttgaaatgggctattatgtttttctgaaaatccataacttttcttacacaaccaatgacacact 464  Q
    |||||||||||| ||||||||||||   || ||||||||   |||| |||||||||||||||||||    
T  32745084 ggttgaaatgggatattatgttttttccaatatccataatcattctgacacaaccaatgacacact 32745149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 79 - 357
Target Start/End: Original strand, 54294961 - 54295239
Alignment:
Q  79 accaagcttctcaataatttgggaactcaaatcaaacaaaactaattcttaatcttttattatgaagaatatttcccccttattccctactcccatagga 178  Q
    |||||||| |||||| ||||||  || ||||||||||||| ||| ||||| ||||||| ||| ||||||||||||||||||  |||| ||||| ||||||    
T  54294961 accaagctcctcaatcatttggctacacaaatcaaacaaagctacttctttatcttttcttacgaagaatatttcccccttcgtccccactccgatagga 54295060  T
Q  179 cgctcaacacaaggcaatggtccaacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagtagtttctt 278  Q
     |||||||| ||| ||| ||||||||||  || |||||| |||| ||||   ||| ||||| |||||||||||||||||  |||||| |||| |  ||||    
T  54295061 tgctcaacataagacaacggtccaacaatgaaaagtttggtccacgattctatcacaccgaattcacccaaaattgatatgtgaaaattagtggactctt 54295160  T
Q  279 caatatatgagaacaatgcaatagacccagttaacactgccaagtttatccacgatgctttaaatttaaaacaatcatc 357  Q
    ||  |||||||| |||||||||  ||||| |||  || |||||| |||||||| |||||| ||  | ||||||||||||    
T  54295161 catgatatgagatcaatgcaatgcacccatttagtaccgccaaggttatccacaatgcttgaacatcaaaacaatcatc 54295239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 117 - 331
Target Start/End: Original strand, 9581901 - 9582115
Alignment:
Q  117 aaactaattcttaatcttttattatgaagaatatttcccccttattccctactcccataggacgctcaacacaaggcaatggtccaacaacaaagagttt 216  Q
    |||||| ||||| ||||| | | |||| ||||||||| || ||  | || ||||| |||||||||||||  |||| ||| |||||||| |  ||||||||    
T  9581901 aaactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccaataggacgctcaatgcaagacaacggtccaaccatgaagagttt 9582000  T
Q  217 gatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagtagtttcttcaatatatgagaacaatgcaatagacccagttaacact 316  Q
    | |||| || | ||| ||||||  |||||||||||||||||  |||||| | || || ||||||  |||||||| ||||||||| |||||| |||||||     
T  9582001 ggtccatgactcctttataccgtattcacccaaaattgatatgtgaaaatttgtcgtctcttcatgatatgagatcaatgcaatggacccatttaacacc 9582100  T
Q  317 gccaagtttatccac 331  Q
    |||||||||||||||    
T  9582101 gccaagtttatccac 9582115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 117 - 331
Target Start/End: Original strand, 9587596 - 9587810
Alignment:
Q  117 aaactaattcttaatcttttattatgaagaatatttcccccttattccctactcccataggacgctcaacacaaggcaatggtccaacaacaaagagttt 216  Q
    |||||| ||||| ||||| | | |||| ||||||||| || ||  | || ||||| |||||||||||||  |||| ||| |||||||| |  ||||||||    
T  9587596 aaactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccaataggacgctcaatgcaagacaacggtccaaccatgaagagttt 9587695  T
Q  217 gatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagtagtttcttcaatatatgagaacaatgcaatagacccagttaacact 316  Q
    | |||| || | ||| ||||||  |||||||||||||||||  |||||| | || || ||||||  |||||||| ||||||||| |||||| |||||||     
T  9587696 ggtccatgactcctttataccgtattcacccaaaattgatatgtgaaaatttgtcgtctcttcatgatatgagatcaatgcaatggacccatttaacacc 9587795  T
Q  317 gccaagtttatccac 331  Q
    |||||||||||||||    
T  9587796 gccaagtttatccac 9587810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 209 - 354
Target Start/End: Complemental strand, 37898012 - 37897867
Alignment:
Q  209 aagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagtagtttcttcaatatatgagaacaatgcaatagacccag 308  Q
    ||||||||| |||| |||| ||||||||| | ||| ||||||| |||||| ||||||||||| || ||||||  |||||||||||||||||| ||| ||     
T  37898012 aagagtttggtccacgattccttcataccaagttcgcccaaaactgatacgtgaaaagtagtcgtctcttcatgatatgagaacaatgcaatggactcat 37897913  T
Q  309 ttaacactgccaagtttatccacgatgctttaaatttaaaacaatc 354  Q
     |||||| ||||||||||||||| | |||||||  | |||||||||    
T  37897912 ataacaccgccaagtttatccacaaagctttaacatcaaaacaatc 37897867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 125 - 338
Target Start/End: Complemental strand, 9569343 - 9569130
Alignment:
Q  125 tcttaatcttttattatgaagaatatttcccccttattccctactcccataggacgctcaacacaaggcaatggtccaacaacaaagagtttgatccaag 224  Q
    |||| ||||||| | |||| ||||||||| || ||  |||| ||||| |||||||||||||  |||| ||| ||||||||||  ||||||||| |||| |    
T  9569343 tctttatcttttctgatgacgaatatttctccttttgtccccactccgataggacgctcaatgcaagacaacggtccaacaaggaagagtttggtccacg 9569244  T
Q  225 atttcttcataccgatttcacccaaaattgatacatgaaaagtagtagtttcttcaatatatgagaacaatgcaatagacccagttaacactgccaagtt 324  Q
    ||| ||| || ||   |||||||||||| ||||  |||||| |||| || ||||||  |||||||| ||| ||||| | |||  |||||||  |||||||    
T  9569243 attccttaatgccatattcacccaaaatcgatatgtgaaaattagtcgtctcttcatgatatgagatcaacgcaatggccccgtttaacaccaccaagtt 9569144  T
Q  325 tatccacgatgctt 338  Q
    ||||||| ||||||    
T  9569143 tatccacaatgctt 9569130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 117 - 336
Target Start/End: Original strand, 9593694 - 9593913
Alignment:
Q  117 aaactaattcttaatcttttattatgaagaatatttcccccttattccctactcccataggacgctcaacacaaggcaatggtccaacaacaaagagttt 216  Q
    |||||| ||||| ||||| | | |||||||||||||| || ||  | || ||||| || ||||||||||   ||| ||| ||||| ||||  ||||  ||    
T  9593694 aaactagttctttatcttctctgatgaagaatatttctcctttcgtacccactccgatgggacgctcaatgaaagacaacggtccgacaatgaagaaatt 9593793  T
Q  217 gatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagtagtttcttcaatatatgagaacaatgcaatagacccagttaacact 316  Q
    | |||| |||| ||| ||||||  |||||||||||||||||  |||||| |||| || |||| |  |||||||| ||||||||  |||||| |||||||     
T  9593794 ggtccacgattcctttataccgtattcacccaaaattgatatctgaaaattagttgtctctttatgatatgagatcaatgcaaaggacccatttaacacc 9593893  T
Q  317 gccaagtttatccacgatgc 336  Q
     |||||||||||||| ||||    
T  9593894 accaagtttatccacaatgc 9593913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 173 - 339
Target Start/End: Original strand, 9602559 - 9602725
Alignment:
Q  173 ataggacgctcaacacaaggcaatggtccaacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagtag 272  Q
    |||||||||||||  |||| ||| | |||||||  |||||||||| |||| || | ||| ||||||  |||||||||||||||||  |||||| || | |    
T  9602559 ataggacgctcaatgcaagacaacgatccaacattaaagagtttggtccacgactcctttataccgtattcacccaaaattgatatttgaaaattattcg 9602658  T
Q  273 tttcttcaatatatgagaacaatgcaatagacccagttaacactgccaagtttatccacgatgcttt 339  Q
    | |||| |  |||||||| ||||| ||  |||||| |||||||  |||||||||||||| |||||||    
T  9602659 tctctttatgatatgagatcaatgaaacggacccatttaacaccaccaagtttatccacaatgcttt 9602725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 192 - 270
Target Start/End: Complemental strand, 20426696 - 20426618
Alignment:
Q  192 gcaatggtccaacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagt 270  Q
    |||||||||||||||||||||||||| |||| |||| |||||  |||| |||||  ||||||||||  |||||||||||    
T  20426696 gcaatggtccaacaacaaagagtttggtccacgattccttcacgccgagttcacttaaaattgatatgtgaaaagtagt 20426618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 73 - 273
Target Start/End: Original strand, 39693 - 39893
Alignment:
Q  73 tttaaaaccaagcttctcaataatttgggaactcaaatcaaacaaaactaattcttaatcttttattatgaagaatatttcccccttattccctactccc 172  Q
    |||| |||||||||  ||||| | ||||| ||| | ||||||| || ||||||| | ||||||| ||  |||||| |||||||| ||  |||| |||||     
T  39693 tttataaccaagctcttcaatcacttgggtacttagatcaaaccaagctaattcattatcttttctttggaagaaaatttccccttttgtccccactccg 39792  T
Q  173 ataggacgctcaacacaaggcaatggtccaacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagtag 272  Q
    |||||||||||||| |||| ||| |||||||||  ||||||||||||||| |||| ||| || |||| |||||||||||||| ||  |||||||||||||    
T  39793 ataggacgctcaacgcaagacaacggtccaacagtaaagagtttgatccacgattccttaatgccgagttcacccaaaattgctatgtgaaaagtagtag 39892  T
Q  273 t 273  Q
    |    
T  39893 t 39893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 273
Target Start/End: Original strand, 33342 - 33542
Alignment:
Q  73 tttaaaaccaagcttctcaataatttgggaactcaaatcaaacaaaactaattcttaatcttttattatgaagaatatttcccccttattccctactccc 172  Q
    |||| |||||||||  ||||| | ||||| ||| | ||||||| || ||||||| | ||||||  ||  |||||| |||||||| ||  |||| ||||      
T  33342 tttataaccaagctcttcaatcacttgggtacttagatcaaaccaagctaattcattatctttcctttggaagaaaatttcccctttcgtccccactctg 33441  T
Q  173 ataggacgctcaacacaaggcaatggtccaacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagtag 272  Q
    |||||||||||||| |||| ||| |||||||||   ||||||||| |||| |||| ||| || |||| |||||||||||||| ||  | |||||||||||    
T  33442 ataggacgctcaacgcaagacaacggtccaacagtgaagagtttggtccacgattccttaatgccgagttcacccaaaattgctatgtcaaaagtagtag 33541  T
Q  273 t 273  Q
    |    
T  33542 t 33542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 39955 - 40015
Alignment:
Q  335 gctttaaatttaaaacaatcatcatcttcatctgagtgtatgggtgttacaaggaacacctcat 398  Q
    |||||||||||||||||||||   |||||||| ||| |||||||||||| |  |||||||||||    
T  39955 gctttaaatttaaaacaatca---tcttcatccgagggtatgggtgttatacagaacacctcat 40015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 109 - 357
Target Start/End: Original strand, 16136 - 16384
Alignment:
Q  109 atcaaacaaaactaattcttaatcttttattatgaagaatatttcccccttattccctactcccataggacgctcaacacaaggcaatggtccaacaaca 208  Q
    ||||||| || ||||||||| ||| ||| ||  |||||||| |||||| ||  |||| ||||| ||||||| |  ||| |||| ||||||||||| |       
T  16136 atcaaaccaagctaattcttcatcctttctttggaagaataattccccttttgtccccactccgataggacacctaacgcaagacaatggtccaatagtg 16235  T
Q  209 aagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagtagtttcttcaatatatgagaacaatgcaatagacccag 308  Q
    ||||| |||||||| |||| |||| |||| |||||||||||||||||||  |||||||||||  ||  ||||  ||| |||| |||||||||  || ||     
T  16236 aagagattgatccatgattccttcttaccaatttcacccaaaattgatatgtgaaaagtagtccttggttcatgataagagatcaatgcaatgcactcat 16335  T
Q  309 ttaacactgccaagtttatccacgatgctttaaatttaaaacaatcatc 357  Q
    |||||  ||||||||||||||| ||||||| ||  | ||||||||||||    
T  16336 ttaaccgtgccaagtttatccatgatgcttcaacatcaaaacaatcatc 16384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 109 - 357
Target Start/End: Complemental strand, 364 - 116
Alignment:
Q  109 atcaaacaaaactaattcttaatcttttattatgaagaatatttcccccttattccctactcccataggacgctcaacacaaggcaatggtccaacaaca 208  Q
    ||||||| || ||||||||| ||| ||| ||  |||||||| |||||| || ||||| ||||| ||||||  |||||| |||| ||||||||||| |       
T  364 atcaaaccaagctaattcttcatcctttctttggaagaataattccccttttttccccactccgataggaaactcaacgcaagacaatggtccaatagtg 265  T
Q  209 aagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagtagtttcttcaatatatgagaacaatgcaatagacccag 308  Q
    ||| | ||| |||| ||||  ||| | || |||||||||||||||||||  |||||||||||  ||  | ||  ||| |||| |||||||||  || ||     
T  264 aagtgattggtccatgattcattctttccaatttcacccaaaattgatatgtgaaaagtagtccttggtacatgataagagatcaatgcaatgcactcat 165  T
Q  309 ttaacactgccaagtttatccacgatgctttaaatttaaaacaatcatc 357  Q
    |||||  ||||||||||||||| ||||||| ||  | ||||||||||||    
T  164 ttaaccatgccaagtttatccaggatgcttcaacatcaaaacaatcatc 116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 257
Target Start/End: Complemental strand, 42446540 - 42446356
Alignment:
Q  73 tttaaaaccaagcttctcaataatttgggaactcaaatcaaacaaaactaattcttaatcttttattatgaagaatatttcccccttattccctactccc 172  Q
    |||| ||||||||  |||||| || | || ||| ||||||| | || ||| ||||  ||||||| | |||||||||||||| || ||  |||| ||| |     
T  42446540 tttataaccaagcccctcaatcatcttggtacttaaatcaagccaagctagttctccatcttttctaatgaagaatatttctcctttcatccccacttcg 42446441  T
Q  173 ataggacgctcaacacaaggcaatggtccaacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgata 257  Q
    |||||||||||||||||| |||| ||||||||||  | ||||||| |||| |||| ||| ||| | | |||||||||||||||||    
T  42446440 ataggacgctcaacacaatgcaacggtccaacaatgacgagtttggtccatgattccttgatagcaagttcacccaaaattgata 42446356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 357
Target Start/End: Complemental strand, 7794016 - 7793739
Alignment:
Q  80 ccaagcttctcaataatttgggaactcaaatcaaacaaaactaattcttaatcttttattatgaagaatatttcccccttattccctactcccataggac 179  Q
    |||||||  ||||| ||||||| ||| | ||||||||| |||||||||   |||||| ||  ||||||||||||||| ||  |||| ||||| |||||||    
T  7794016 ccaagctcttcaatcatttgggtacttagatcaaacaatactaattctctgtcttttctttggaagaatatttcccctttcgtccccactccaataggac 7793917  T
Q  180 gctcaacacaaggcaatggtccaacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagtagtttcttc 279  Q
    |||| |   |||  |||||||||| ||  ||||||||  |||| |||  ||||| ||||| || | ||||||| | || ||| ||| || ||||  ||||    
T  7793916 gctcgatgaaagaaaatggtccaataatgaagagtttagtccacgatcccttcacaccgaatttatccaaaatggctatatggaaattattagtcacttc 7793817  T
Q  280 aatatatgagaacaatgcaatagacccagttaacactgccaagtttatccacgatgctttaaatttaaaacaatcatc 357  Q
    |  | ||| || ||| | |||  | ||| |||||||  |||| ||||||||||| |||||||||||||||||||||||    
T  7793816 atgaaatgtgatcaaggaaatgtagccatttaacaccaccaaatttatccacgaagctttaaatttaaaacaatcatc 7793739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 5438313 - 5438370
Alignment:
Q  211 gagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagta 268  Q
    |||||| ||||| |||| ||||||||| | ||||||||||| ||||| ||||||||||    
T  5438313 gagttttatccatgattccttcataccaagttcacccaaaactgatatatgaaaagta 5438370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 5447289 - 5447346
Alignment:
Q  211 gagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagta 268  Q
    |||||| ||||| |||| ||||||||| | ||||||||||| ||||| ||||||||||    
T  5447289 gagttttatccatgattccttcataccaagttcacccaaaactgatatatgaaaagta 5447346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 264
Target Start/End: Complemental strand, 26607195 - 26607069
Alignment:
Q  138 ttatgaagaatatttcccccttattccctactcccataggacgctcaacacaaggcaatggtccaacaacaaagagtttgatccaagatttcttcatacc 237  Q
    |||| |||||||| || ||||| ||||| ||||| | |||||| | ||||||||| || |||||||||||||||||||| ||||| ||||  |||| |||    
T  26607195 ttataaagaatatatcacccttcttcccgactccaacaggacgatgaacacaaggtaaaggtccaacaacaaagagtttaatccatgattctttcacacc 26607096  T
Q  238 gatttcacccaaaattgatacatgaaa 264  Q
    || ||| || |||| ||||| ||||||    
T  26607095 gagttcgcctaaaactgatatatgaaa 26607069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 40549344 - 40549288
Alignment:
Q  201 caacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgata 257  Q
    |||||||||||||||||||||| |||| ||||| ||||| |||||||||||||||||    
T  40549344 caacaacaaagagtttgatccatgattccttcacaccgacttcacccaaaattgata 40549288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 267
Target Start/End: Original strand, 42629597 - 42629697
Alignment:
Q  167 actcccataggacgctcaacacaaggcaatggtccaacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaag 266  Q
    ||||| |||||| |||||||||| | ||| || || |||| ||| ||||||||||| || | |||||  |||| ||||||||||||||||| ||||||||    
T  42629597 actccaataggatgctcaacacaggtcaacggacccacaataaaaagtttgatccatgactccttcactccgacttcacccaaaattgatatatgaaaag 42629696  T
Q  267 t 267  Q
    |    
T  42629697 t 42629697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 43322868 - 43322796
Alignment:
Q  200 ccaacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagtag 272  Q
    ||||||| |||||||||||||||  ||||||| | ||||| |||||||||||| || | ||||||||||||||    
T  43322868 ccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagtagtag 43322796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 270
Target Start/End: Original strand, 42564914 - 42565041
Alignment:
Q  143 aagaatatttcccccttattccctactcccataggacgctcaacacaaggcaatggtccaacaacaaagagtttgatccaagatttcttcataccgattt 242  Q
    ||||||||||| ||||| || || ||||| ||||||   | ||| ||||||| |||||||||||  || ||||||||||| |||| ||| | ||| | ||    
T  42564914 aagaatatttctcccttctttcccactccaataggaatatgaacgcaaggcagtggtccaacaatgaaaagtttgatccatgattccttgacacctagtt 42565013  T
Q  243 cacccaaaattgatacatgaaaagtagt 270  Q
    ||||||||| |||||  | |||||||||    
T  42565014 cacccaaaactgatatgttaaaagtagt 42565041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 267
Target Start/End: Complemental strand, 31789581 - 31789523
Alignment:
Q  209 aagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagt 267  Q
    |||||||||||||| |||| ||||| ||| | ||||||||||||||||| ||| |||||    
T  31789581 aagagtttgatccatgattccttcacaccaacttcacccaaaattgatatatggaaagt 31789523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 32643134 - 32642992
Alignment:
Q  88 ctcaataatttgggaactcaaatcaaacaaaactaattcttaatcttttattatgaagaatatttcccccttattccctactcccataggacgctcaaca 187  Q
    |||||| ||||||| ||| ||||||||| || ||| || || | ||||| || ||||||||||||  |||||  |||| ||||| | ||||||||| |||    
T  32643134 ctcaatcatttgggtacttaaatcaaaccaagctagttttttaactttttttttgaagaatattttgccctt--tccc-actccaaaaggacgctcgaca 32643038  T
Q  188 caaggcaatggtccaacaacaaagagtttgatccaagatttcttca 233  Q
    || | ||  ||||||||||  |||||||||||||| |||| |||||    
T  32643037 catgacagaggtccaacaatgaagagtttgatccatgattccttca 32642992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 267
Target Start/End: Complemental strand, 37513004 - 37512898
Alignment:
Q  161 ttccctactcccataggacgctcaacacaaggcaatggtccaacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacat 260  Q
    ||||||||||| |||||| | || ||| ||||||  |||||||||   | |||||||||||| |||||||||  ||| |  ||||||||||||||||  |    
T  37513004 ttccctactccgataggatgttctacataaggcatgggtccaacagtcatgagtttgatccatgatttcttcccaccaacctcacccaaaattgatatgt 37512905  T
Q  261 gaaaagt 267  Q
    |||||||    
T  37512904 gaaaagt 37512898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 42637359 - 42637420
Alignment:
Q  209 aagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagt 270  Q
    ||||||||| |||| |||| |||||  |||| |||||||||||||||||  |||||||||||    
T  42637359 aagagtttggtccatgattccttcaccccgacttcacccaaaattgatatgtgaaaagtagt 42637420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 138 - 270
Target Start/End: Original strand, 7488692 - 7488824
Alignment:
Q  138 ttatgaagaatatttcccccttattccctactcccataggacgctcaacacaaggcaatggtccaacaacaaagagtttgatccaagatttcttcatacc 237  Q
    |||||||||| || ||||| || |||||| |||  ||||||||  ||||||||| |||||||||||||   || |||||  |||| ||||  |||| |||    
T  7488692 ttatgaagaaaatatccccattcttccctcctctgataggacgtgcaacacaagacaatggtccaacattgaaaagttttttccatgattctttcacacc 7488791  T
Q  238 gatttcacccaaaattgatacatgaaaagtagt 270  Q
     |||||||||||||||||||  |||||||||||    
T  7488792 aatttcacccaaaattgatatgtgaaaagtagt 7488824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 270
Target Start/End: Original strand, 44937793 - 44937867
Alignment:
Q  196 tggtccaacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatgaaaagtagt 270  Q
    |||||||||||||||||||||  |||| ||||  ||||  |||| |||||||||||||||||  |||||||||||    
T  44937793 tggtccaacaacaaagagtttagtccatgattctttcacgccgagttcacccaaaattgatatgtgaaaagtagt 44937867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 162 - 270
Target Start/End: Complemental strand, 368909 - 368801
Alignment:
Q  162 tccctactcccataggacgctcaacacaaggcaatggtccaacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacatg 261  Q
    |||||||||| ||||||  | | ||| |||| |||||||||||||  |||||||||||||| |||| ||||| ||| |||||||| | ||||||||  ||    
T  368909 tccctactccaataggatacccgacaaaaggtaatggtccaacaatgaagagtttgatccatgattccttcacaccaatttcaccaagaattgatatgtg 368810  T
Q  262 aaaagtagt 270  Q
    |||||||||    
T  368809 aaaagtagt 368801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 270
Target Start/End: Complemental strand, 361992 - 361883
Alignment:
Q  161 ttccctactcccataggacgctcaacacaaggcaatggtccaacaacaaagagtttgatccaagatttcttcataccgatttcacccaaaattgatacat 260  Q
    ||||||||||| ||| || || ||| |||||  |||||||||||||  ||||| || ||||| |||| ||||| |||||||||||| | ||||||||  |    
T  361992 ttccctactccaataagatgcccaaaacaagataatggtccaacaatgaagagctttatccatgattccttcacaccgatttcaccaagaattgatatgt 361893  T
Q  261 gaaaagtagt 270  Q
    ||||||||||    
T  361892 gaaaagtagt 361883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 5162511 - 5162463
Alignment:
Q  209 aagagtttgatccaagatttcttcataccgatttcacccaaaattgata 257  Q
    |||||||||||||| |||| ||||| ||| | |||||||||||||||||    
T  5162511 aagagtttgatccatgattccttcacaccaacttcacccaaaattgata 5162463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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