View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13991_low_8 (Length: 237)

Name: NF13991_low_8
Description: NF13991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13991_low_8
NF13991_low_8
[»] chr4 (2 HSPs)
chr4 (10-111)||(52302970-52303071)
chr4 (184-220)||(13563660-13563696)
[»] chr5 (1 HSPs)
chr5 (176-220)||(19609058-19609102)
[»] chr6 (3 HSPs)
chr6 (175-210)||(21698840-21698875)
chr6 (176-210)||(30063568-30063602)
chr6 (183-220)||(11986335-11986372)
[»] chr1 (1 HSPs)
chr1 (176-220)||(4180091-4180135)
[»] chr7 (2 HSPs)
chr7 (175-205)||(5086730-5086760)
chr7 (184-220)||(9697283-9697319)
[»] chr2 (1 HSPs)
chr2 (180-210)||(31426579-31426609)
[»] scaffold0114 (1 HSPs)
scaffold0114 (184-216)||(11443-11475)
[»] chr3 (1 HSPs)
chr3 (183-211)||(2439619-2439647)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 52302970 - 52303071
Alignment:
Q  10 tcgaagaatatataatcatacaaaaatgaataaaattctaaatataggattgttgtttctagcttatgttggattggatttgaagaaaaaaagaatctag 109  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52302970 tcgaacaaaatataatcatacaaaaatgaataaaattctaaatataggattgttgtttctagcttatgttggattggatttgaagaaaaaaagaatctag 52303069  T
Q  110 ta 111  Q
    ||    
T  52303070 ta 52303071  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 13563660 - 13563696
Alignment:
Q  184 taaattatatcatttcattaaaaattaagtcggtaat 220  Q
    |||||||||||||||||||||||||||| || |||||    
T  13563660 taaattatatcatttcattaaaaattaaatcagtaat 13563696  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 19609058 - 19609102
Alignment:
Q  176 agaaaaggtaaattatatcatttcattaaaaattaagtcggtaat 220  Q
    |||||||||||||||||||||||||||||||||||  ||||||||    
T  19609058 agaaaaggtaaattatatcatttcattaaaaattagatcggtaat 19609102  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 21698875 - 21698840
Alignment:
Q  175 gagaaaaggtaaattatatcatttcattaaaaatta 210  Q
    ||||||||||||||||||||||||||||||||||||    
T  21698875 gagaaaaggtaaattatatcatttcattaaaaatta 21698840  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 30063568 - 30063602
Alignment:
Q  176 agaaaaggtaaattatatcatttcattaaaaatta 210  Q
    |||||||||||||||||||||||||||||||||||    
T  30063568 agaaaaggtaaattatatcatttcattaaaaatta 30063602  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 11986372 - 11986335
Alignment:
Q  183 gtaaattatatcatttcattaaaaattaagtcggtaat 220  Q
    |||||||||||||||||||||||||| | |||||||||    
T  11986372 gtaaattatatcatttcattaaaaatcaggtcggtaat 11986335  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 4180135 - 4180091
Alignment:
Q  176 agaaaaggtaaattatatcatttcattaaaaattaagtcggtaat 220  Q
    |||||| ||||||||||||||||||||||||||||  ||||||||    
T  4180135 agaaaaagtaaattatatcatttcattaaaaattagatcggtaat 4180091  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 205
Target Start/End: Complemental strand, 5086760 - 5086730
Alignment:
Q  175 gagaaaaggtaaattatatcatttcattaaa 205  Q
    |||||||||||||||||||||||||||||||    
T  5086760 gagaaaaggtaaattatatcatttcattaaa 5086730  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 9697283 - 9697319
Alignment:
Q  184 taaattatatcatttcattaaaaattaagtcggtaat 220  Q
    |||||||||||||||||||||||||||| || |||||    
T  9697283 taaattatatcatttcattaaaaattaaatcagtaat 9697319  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 210
Target Start/End: Complemental strand, 31426609 - 31426579
Alignment:
Q  180 aaggtaaattatatcatttcattaaaaatta 210  Q
    |||||||||||||||||||||||||||||||    
T  31426609 aaggtaaattatatcatttcattaaaaatta 31426579  T

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Target: scaffold0114 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 11443 - 11475
Alignment:
Q  184 taaattatatcatttcattaaaaattaagtcgg 216  Q
    ||||||||||||||||||||||||| |||||||    
T  11443 taaattatatcatttcattaaaaatcaagtcgg 11475  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 2439647 - 2439619
Alignment:
Q  183 gtaaattatatcatttcattaaaaattaa 211  Q
    |||||||||||||||||||||||||||||    
T  2439647 gtaaattatatcatttcattaaaaattaa 2439619  T

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