View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13992_high_1 (Length: 724)

Name: NF13992_high_1
Description: NF13992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13992_high_1
NF13992_high_1
[»] chr2 (1 HSPs)
chr2 (9-704)||(3557035-3557730)


Alignment Details
Target: chr2 (Bit Score: 645; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 9 - 704
Target Start/End: Original strand, 3557035 - 3557730
Alignment:
Q  9 acatcatcacaatcctttcctctattttccattgcttctacttcacaaacttcaccattttcttcacaacttcnnnnnnnnnttcctctccattctcttc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||    
T  3557035 acatcatcacaatcctttcctctattttccattgcttctacttcacaaacttcaccattttcttcacaacttcaaaaaaaaaatcctctccattctcttc 3557134  T
Q  109 aagcttccaacatccttctttgctcttctcgttctcttcctattagcttacaatgctttcaccgttttctgcattcacattcctcatcattactccccac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3557135 aagcttccaacatccttctttgctcttctcgttctcttcctattagcttacaatgctttcaccgttttctgcattcacattcctcatcattactccccac 3557234  T
Q  209 acaaacctctccttcttcctccaccatcacacaccaaaaccaaactctcttcttctgttttcttcgcccacaaggaagataattcaccaatcatcaacaa 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3557235 acaaacctctccttcttcctccaccatcacacaccaaaaccaaactctcttcgtctgttttcttcgcccacaaggaagataattcaccaatcatcaacaa 3557334  T
Q  309 aactcatttccctcttctccacaaaatctccattcacaaattcaagagagttaaaaaacacaaacgtggcctaaaaaccttgcactctgacacaaaattt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3557335 aactcatttccctcttctccacaaaatctccattcacaaattcaagagagttaaaaaacacaaacgtggcctaaaaaccttgcactctgacacaaaattt 3557434  T
Q  409 ccactttttcaaaaaagacttggtgcatttttcaatggaaattcttcttcttgttcttgcaagttgagattttttatgacttggatttcacccttgaaag 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3557435 ccactttttcaaaaaagacttggtgcatttttcaatggaaattcttcttcatgttcttgcaagttgagattttttatgacttggatttcacccttgaaag 3557534  T
Q  509 catttggtgatcgagaattgttatcaattgaaagcttgttcaagtcacacccaaaagcttgtttggtgatagtctcaaagtcaatggattctgataaagg 608  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3557535 catttggtgatagagaattgttatcagttgaaagcttgttcaagtcacacccaaaagcttgtttggtgatagtctcaaagtcaatggattctgataaagg 3557634  T
Q  609 aacacaaattctaagaccctttgtgaaaaatggttttagagtcattgcaattgaacctgatttcaactatatattcaaaaacactcatgcagaatc 704  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3557635 aactcaaattctaagaccctttgtgaaaaatggttttagagtcattgcaattgaacctgatttcaactatatattcaaaaacactcatgcagaatc 3557730  T

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