View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13992_high_9 (Length: 224)

Name: NF13992_high_9
Description: NF13992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13992_high_9
NF13992_high_9
[»] chr1 (8 HSPs)
chr1 (1-174)||(34076640-34076813)
chr1 (175-224)||(34075461-34075510)
chr1 (97-142)||(11018924-11018969)
chr1 (97-131)||(5222775-5222809)
chr1 (97-131)||(17419868-17419902)
chr1 (97-134)||(15392182-15392219)
chr1 (95-131)||(8520080-8520116)
chr1 (95-131)||(21638253-21638289)
[»] chr7 (6 HSPs)
chr7 (97-173)||(40792801-40792877)
chr7 (97-135)||(12578449-12578487)
chr7 (97-150)||(13310414-13310467)
chr7 (97-131)||(8585172-8585206)
chr7 (97-131)||(23396895-23396929)
chr7 (99-131)||(29780228-29780260)
[»] scaffold0032 (1 HSPs)
scaffold0032 (101-134)||(45349-45382)
[»] chr2 (7 HSPs)
chr2 (97-150)||(37812272-37812325)
chr2 (97-173)||(37812502-37812578)
chr2 (96-131)||(6183354-6183389)
chr2 (97-131)||(5424771-5424805)
chr2 (97-131)||(22447181-22447215)
chr2 (97-134)||(41002311-41002348)
chr2 (99-131)||(10429820-10429852)
[»] chr6 (6 HSPs)
chr6 (97-173)||(15102935-15103011)
chr6 (97-131)||(15102613-15102647)
chr6 (97-131)||(16590265-16590299)
chr6 (97-131)||(16605081-16605115)
chr6 (97-131)||(17096687-17096721)
chr6 (97-134)||(19712393-19712430)
[»] chr4 (9 HSPs)
chr4 (97-173)||(27634085-27634161)
chr4 (97-131)||(991285-991319)
chr4 (97-131)||(1922980-1923014)
chr4 (97-131)||(8559960-8559994)
chr4 (97-131)||(10390464-10390498)
chr4 (98-136)||(39910406-39910444)
chr4 (97-126)||(21646793-21646822)
chr4 (97-134)||(56511582-56511619)
chr4 (95-131)||(28395258-28395294)
[»] chr5 (4 HSPs)
chr5 (95-150)||(17129933-17129988)
chr5 (96-131)||(27760456-27760491)
chr5 (97-131)||(24125143-24125177)
chr5 (96-126)||(24125211-24125241)
[»] chr3 (7 HSPs)
chr3 (97-148)||(10758997-10759048)
chr3 (97-131)||(12800171-12800205)
chr3 (97-131)||(33909619-33909653)
chr3 (97-134)||(50057237-50057274)
chr3 (97-134)||(50057367-50057404)
chr3 (98-134)||(38422061-38422097)
chr3 (98-126)||(53981895-53981923)
[»] chr8 (6 HSPs)
chr8 (97-131)||(15010810-15010844)
chr8 (97-131)||(33435760-33435794)
chr8 (97-131)||(36039783-36039817)
chr8 (97-133)||(7621973-7622009)
chr8 (97-133)||(31767059-31767095)
chr8 (99-131)||(36037271-36037303)


Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 34076813 - 34076640
Alignment:
Q  1 gagaaattattttagataacattttacaattttgagaatgtagttaccaatttataaaaatcaaagacgatgcatataatttttaggattaacgtgtgtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  34076813 gagaaattattttagataacattttacaattttgagaatgtagttaccaatttataaaaaacaaagacgatgcatataatttttaggattaacttgtgtt 34076714  T
Q  101 gaaatttggggtctaactcatccttataaaatcgatctgtgaagtgaggacaaccccctcttttaaacacattt 174  Q
    ||||||||||| |||||||||||||||||||||| | ||||||||||||||  ||||| |||||||||||||||    
T  34076713 gaaatttggggcctaactcatccttataaaatcggtttgtgaagtgaggactgcccccacttttaaacacattt 34076640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 34075510 - 34075461
Alignment:
Q  175 accaaaatattaagtaaagtagctgttggtttgcaataactatttcatcc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34075510 accaaaatattaagtaaagtagctgttggtttgcaataactatttcatcc 34075461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 11018969 - 11018924
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaatcgatctgtga 142  Q
    |||||||||||| ||||||||||||||||| ||||||||| |||||    
T  11018969 tgttgaaatttgaggtctaactcatccttacaaaatcgatttgtga 11018924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 5222809 - 5222775
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaa 131  Q
    ||||||||||| |||||||||||||||||||||||    
T  5222809 tgttgaaatttagggtctaactcatccttataaaa 5222775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 17419902 - 17419868
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaa 131  Q
    |||||||||||||||||||||||||||||| ||||    
T  17419902 tgttgaaatttggggtctaactcatccttacaaaa 17419868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 15392219 - 15392182
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaatcg 134  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  15392219 tgttgaaatttggggcctaactcatccttacaaaatcg 15392182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 8520080 - 8520116
Alignment:
Q  95 tgtgttgaaatttggggtctaactcatccttataaaa 131  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  8520080 tgtgttgaaatttggggtctaactcatctttacaaaa 8520116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 21638253 - 21638289
Alignment:
Q  95 tgtgttgaaatttggggtctaactcatccttataaaa 131  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  21638253 tgtgttgaaatttggggcctaactcatccttacaaaa 21638289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 40792801 - 40792877
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaatcgatctgtgaagtgaggacaaccccctcttttaaacacatt 173  Q
    |||| ||||||||||||||||||||||||| |||||||   ||||| |||||||| ||| || ||| ||||||||||    
T  40792801 tgttaaaatttggggtctaactcatccttacaaaatcggcttgtgaggtgaggactaccgccacttataaacacatt 40792877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 12578449 - 12578487
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaatcga 135  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  12578449 tgttgaaatttggggtctaactcatccttacaaaatcga 12578487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 13310414 - 13310467
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaatcgatctgtgaagtgagga 150  Q
    ||||||||||||||| |||||||||||||| |||| || | |||||||||||||    
T  13310414 tgttgaaatttggggcctaactcatccttacaaaaccggtttgtgaagtgagga 13310467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 8585206 - 8585172
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaa 131  Q
    |||||||||||||||||||||||||||||| ||||    
T  8585206 tgttgaaatttggggtctaactcatccttacaaaa 8585172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 23396929 - 23396895
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaa 131  Q
    |||||||||||||||||||||||||||||| ||||    
T  23396929 tgttgaaatttggggtctaactcatccttacaaaa 23396895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 29780260 - 29780228
Alignment:
Q  99 ttgaaatttggggtctaactcatccttataaaa 131  Q
    ||||||||||||| |||||||||||||||||||    
T  29780260 ttgaaatttggggcctaactcatccttataaaa 29780228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 134
Target Start/End: Complemental strand, 45382 - 45349
Alignment:
Q  101 gaaatttggggtctaactcatccttataaaatcg 134  Q
    ||||||||||||||||||||||||||||||||||    
T  45382 gaaatttggggtctaactcatccttataaaatcg 45349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 37812272 - 37812325
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaatcgatctgtgaagtgagga 150  Q
    ||||| |||||||||||||||||||||||| ||||||||  ||||| |||||||    
T  37812272 tgttgtaatttggggtctaactcatccttacaaaatcgacttgtgaggtgagga 37812325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 37812502 - 37812578
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaatcgatctgtgaagtgaggacaaccccctcttttaaacacatt 173  Q
    ||||| ||||||||| |||||||||||||| ||||||||  ||||| |||||||   ||||| ||| ||||||||||    
T  37812502 tgttgtaatttggggcctaactcatccttacaaaatcgacttgtgaggtgaggattgcccccacttataaacacatt 37812578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 131
Target Start/End: Original strand, 6183354 - 6183389
Alignment:
Q  96 gtgttgaaatttggggtctaactcatccttataaaa 131  Q
    ||||||||||||||||||||||||||||||| ||||    
T  6183354 gtgttgaaatttggggtctaactcatccttacaaaa 6183389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 5424771 - 5424805
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaa 131  Q
    |||||||||||||||||||||||||||||| ||||    
T  5424771 tgttgaaatttggggtctaactcatccttacaaaa 5424805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 22447215 - 22447181
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaa 131  Q
    |||||||||||||||||||||||||||||| ||||    
T  22447215 tgttgaaatttggggtctaactcatccttacaaaa 22447181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 41002348 - 41002311
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaatcg 134  Q
    |||||||||||||||  |||||||||||||||||||||    
T  41002348 tgttgaaatttggggcataactcatccttataaaatcg 41002311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 10429852 - 10429820
Alignment:
Q  99 ttgaaatttggggtctaactcatccttataaaa 131  Q
    |||||||||||||||||||||||||||| ||||    
T  10429852 ttgaaatttggggtctaactcatccttacaaaa 10429820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 15102935 - 15103011
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaatcgatctgtgaagtgaggacaaccccctcttttaaacacatt 173  Q
    |||||||||||| ||||||||||||||||| |||| ||  |||||||||||| |   ||||| ||| ||||||||||    
T  15102935 tgttgaaatttgtggtctaactcatccttacaaaaccggcctgtgaagtgagaattgcccccgcttataaacacatt 15103011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 15102613 - 15102647
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaa 131  Q
    |||||||||||||||||||||||||||||| ||||    
T  15102613 tgttgaaatttggggtctaactcatccttacaaaa 15102647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 16590299 - 16590265
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaa 131  Q
    |||||||||||||||||||||||||||||| ||||    
T  16590299 tgttgaaatttggggtctaactcatccttacaaaa 16590265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 16605081 - 16605115
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaa 131  Q
    |||||||||||||||||||||||||||||| ||||    
T  16605081 tgttgaaatttggggtctaactcatccttacaaaa 16605115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 17096687 - 17096721
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaa 131  Q
    |||||||||||||||||||||||||||||| ||||    
T  17096687 tgttgaaatttggggtctaactcatccttacaaaa 17096721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 19712393 - 19712430
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaatcg 134  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  19712393 tgttgaaatttggggcctaactcatccttacaaaatcg 19712430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 27634085 - 27634161
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaatcgatctgtgaagtgaggacaaccccctcttttaaacacatt 173  Q
    ||||| ||||||||| |||||||||||||| ||||||| | ||||| |||||||   ||||| ||| ||||||||||    
T  27634085 tgttgtaatttggggcctaactcatccttacaaaatcggtttgtgaggtgaggattgcccccacttataaacacatt 27634161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 991319 - 991285
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaa 131  Q
    |||||||||||||||||||||||||||||| ||||    
T  991319 tgttgaaatttggggtctaactcatccttacaaaa 991285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 1922980 - 1923014
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaa 131  Q
    |||||||||||||||||| ||||||||||||||||    
T  1922980 tgttgaaatttggggtctgactcatccttataaaa 1923014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 8559960 - 8559994
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaa 131  Q
    |||||||||||||||||||||||||||||| ||||    
T  8559960 tgttgaaatttggggtctaactcatccttacaaaa 8559994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 10390464 - 10390498
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaa 131  Q
    |||||||||||||||||||||||||||||| ||||    
T  10390464 tgttgaaatttggggtctaactcatccttacaaaa 10390498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 136
Target Start/End: Original strand, 39910406 - 39910444
Alignment:
Q  98 gttgaaatttggggtctaactcatccttataaaatcgat 136  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  39910406 gttgtaatttggggtctaactcatccttacaaaatcgat 39910444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 126
Target Start/End: Original strand, 21646793 - 21646822
Alignment:
Q  97 tgttgaaatttggggtctaactcatcctta 126  Q
    ||||||||||||||||||||||||||||||    
T  21646793 tgttgaaatttggggtctaactcatcctta 21646822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 56511619 - 56511582
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaatcg 134  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  56511619 tgttgaaatttggggcctaactcatccttacaaaatcg 56511582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 28395294 - 28395258
Alignment:
Q  95 tgtgttgaaatttggggtctaactcatccttataaaa 131  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  28395294 tgtgttgaaatttggggcctaactcatccttacaaaa 28395258  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 17129933 - 17129988
Alignment:
Q  95 tgtgttgaaatttggggtctaactcatccttataaaatcgatctgtgaagtgagga 150  Q
    ||||||||||||| |||||||||||||| |||| |||||||  || ||||||||||    
T  17129933 tgtgttgaaattttgggtctaactcatcattatgaaatcgacttgcgaagtgagga 17129988  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 131
Target Start/End: Complemental strand, 27760491 - 27760456
Alignment:
Q  96 gtgttgaaatttggggtctaactcatccttataaaa 131  Q
    ||||||||||||||||||||||||||||||| ||||    
T  27760491 gtgttgaaatttggggtctaactcatccttacaaaa 27760456  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 24125177 - 24125143
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaa 131  Q
    |||||||||||||||||||||||||||||| ||||    
T  24125177 tgttgaaatttggggtctaactcatccttacaaaa 24125143  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 126
Target Start/End: Complemental strand, 24125241 - 24125211
Alignment:
Q  96 gtgttgaaatttggggtctaactcatcctta 126  Q
    |||||||||||||||||||||||||||||||    
T  24125241 gtgttgaaatttggggtctaactcatcctta 24125211  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 10758997 - 10759048
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaatcgatctgtgaagtgag 148  Q
    |||||||||||||||||||||||||||||| |||| |||  ||||| |||||    
T  10758997 tgttgaaatttggggtctaactcatccttacaaaaccgacttgtgaggtgag 10759048  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 12800205 - 12800171
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaa 131  Q
    |||||||||||||||||||||||||| ||||||||    
T  12800205 tgttgaaatttggggtctaactcatctttataaaa 12800171  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 33909619 - 33909653
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaa 131  Q
    |||||||||||||||||||||||||||||| ||||    
T  33909619 tgttgaaatttggggtctaactcatccttacaaaa 33909653  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 50057274 - 50057237
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaatcg 134  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  50057274 tgttgaaatttggggcctaactcatccttacaaaatcg 50057237  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 50057404 - 50057367
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaatcg 134  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  50057404 tgttgaaatttggggcctaactcatccttacaaaatcg 50057367  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 38422097 - 38422061
Alignment:
Q  98 gttgaaatttggggtctaactcatccttataaaatcg 134  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  38422097 gttgaaatttggggtctaactcaaccttacaaaatcg 38422061  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 126
Target Start/End: Complemental strand, 53981923 - 53981895
Alignment:
Q  98 gttgaaatttggggtctaactcatcctta 126  Q
    |||||||||||||||||||||||||||||    
T  53981923 gttgaaatttggggtctaactcatcctta 53981895  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 15010810 - 15010844
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaa 131  Q
    ||||||||||||||| |||||||||||||||||||    
T  15010810 tgttgaaatttggggcctaactcatccttataaaa 15010844  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 33435794 - 33435760
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaa 131  Q
    |||||||||||||||||||||||||||||| ||||    
T  33435794 tgttgaaatttggggtctaactcatccttacaaaa 33435760  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 36039783 - 36039817
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaa 131  Q
    |||||||||||||||||||||||||||||| ||||    
T  36039783 tgttgaaatttggggtctaactcatccttacaaaa 36039817  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 7622009 - 7621973
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaatc 133  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  7622009 tgttgaaatttggggcctaactcatccttacaaaatc 7621973  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 31767095 - 31767059
Alignment:
Q  97 tgttgaaatttggggtctaactcatccttataaaatc 133  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  31767095 tgttgaaatttggggcctaactcatccttacaaaatc 31767059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 36037303 - 36037271
Alignment:
Q  99 ttgaaatttggggtctaactcatccttataaaa 131  Q
    |||||||||||||||||||||||||||| ||||    
T  36037303 ttgaaatttggggtctaactcatccttacaaaa 36037271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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