View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13992_low_3 (Length: 471)

Name: NF13992_low_3
Description: NF13992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13992_low_3
NF13992_low_3
[»] chr7 (7 HSPs)
chr7 (1-452)||(5315898-5316351)
chr7 (282-452)||(5303283-5303458)
chr7 (299-452)||(5288878-5289032)
chr7 (350-452)||(5285095-5285197)
chr7 (281-452)||(5311184-5311359)
chr7 (341-452)||(46706212-46706323)
chr7 (282-325)||(5285233-5285276)
[»] chr5 (6 HSPs)
chr5 (341-452)||(1505764-1505875)
chr5 (350-452)||(1492955-1493057)
chr5 (357-452)||(1482980-1483075)
chr5 (350-443)||(1487466-1487559)
chr5 (374-440)||(1500039-1500105)
chr5 (378-440)||(1478798-1478860)
[»] chr1 (3 HSPs)
chr1 (341-452)||(44129361-44129472)
chr1 (341-452)||(44133566-44133677)
chr1 (341-452)||(44141988-44142099)
[»] chr2 (1 HSPs)
chr2 (349-453)||(24163022-24163126)


Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 5316351 - 5315898
Alignment:
Q  1 acaaaaagtcacaaaataaaattgg-caatattataatctgcaagaagagcacatatata-ttttttgaacaatatattatattactacatttaaaatat 98  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||    
T  5316351 acaaaaagtcacaaaataaaattgtacaatattataatctgcaagaagagcacatattttgttttttgaacaatatattatattactacatttaaaatat 5316252  T
Q  99 aattcattagttacaaacatcttcatcgtctttaacatgttaacgccattttcttcttaattataaatgatattttgtcaaataattaaagagctattgt 198  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5316251 aattcattagttacaaacatcttcatcgtctctaacatgttaacaccattttcttcttaattataaatgatattttgtcaaataattaaagagctattgt 5316152  T
Q  199 tagaatatacagctaatttgttataaaaattatgaaactaacacaattgtattactattttaatacgacggtatacaagttgaaacattagatgaaattc 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5316151 tagaatatacagctaatttgttataaaaattatgaaactaacacaattgtattactattttaatacgacggtatacaagttgaaacattagatgaaattc 5316052  T
Q  299 catcattacataaaaattaaacaaatttgaaatcgatgcataaaaataaacaagcatctcatatagccatgctgcgcaaaacaaccgtttcaatggtaag 398  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5316051 catcattacataaaaattaaacaaatttgaaatcgatacataaaaataaataagcatctcatatagccacgctgcgcaaaacaaccgtttcaatggtaag 5315952  T
Q  399 tcctggtccaaaaccaaataatacaccccattcaagtccttctccagttgtctt 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5315951 tcctggtccaaaaccaaataatacaccccattcaagtccttctcccgttgtctt 5315898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 282 - 452
Target Start/End: Complemental strand, 5303458 - 5303283
Alignment:
Q  282 aacattagatgaaattccatcattacataaaaattaaacaaatttgaaatcgatgcataaaaataaac-----aagcatctcatatagccatgctgcgca 376  Q
    |||| ||||||||||| |||| |||| |||||||||||||||||  |||| ||| ||| |||| |||      |||||||||||||||| |  |||||||    
T  5303458 aacactagatgaaatttcatccttacgtaaaaattaaacaaattgaaaattgatacatgaaaacaaaataattaagcatctcatatagcgacactgcgca 5303359  T
Q  377 aaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttctccagttgtctt 452  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5303358 aaacaaccgtttcaattgtaagtcctggtccaaaaccaaataacacaccccattcaagtccttctccagttgtctt 5303283  T

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Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 299 - 452
Target Start/End: Original strand, 5288878 - 5289032
Alignment:
Q  299 catcattacataaaaattaaacaaatttgaaatcgatgcata-aaaataaacaagcatctcatatagccatgctgcgcaaaacaaccgtttcaatggtaa 397  Q
    |||| |||||||||| |||||||||||||||||| ||| | | |||||||  || |||||||||| ||||  || || |||||||| |||||||||||||    
T  5288878 catccttacataaaagttaaacaaatttgaaatcaatgaaaataaaataattaaacatctcatatggccacactacgtaaaacaacagtttcaatggtaa 5288977  T
Q  398 gtcctggtccaaaaccaaataatacaccccattcaagtccttctccagttgtctt 452  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5288978 gtcctggtccaaaaccaaataagacaccccattcaagtccttctccagttgtctt 5289032  T

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Target: chr7; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 350 - 452
Target Start/End: Complemental strand, 5285197 - 5285095
Alignment:
Q  350 aagcatctcatatagccatgctgcgcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttctccagttgt 449  Q
    ||||||||||||| || |  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5285197 aagcatctcatatggcaacactgcgcaaaacaacggtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttctcccgttgt 5285098  T
Q  450 ctt 452  Q
    |||    
T  5285097 ctt 5285095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 281 - 452
Target Start/End: Complemental strand, 5311359 - 5311184
Alignment:
Q  281 aaacattagatgaaattccatcattacataaaaattaaacaaatttgaaatcgatgcataaaaataaac----aagcatctcatatagccatgctgcgca 376  Q
    ||||| ||||||||||| ||||  |||||||||  ||||||||||  ||||||||  || ||||||||     || |||||||||| | ||  || ||||    
T  5311359 aaacactagatgaaattacatccatacataaaagataaacaaattataaatcgataaatgaaaataaaatattaaacatctcatatggtcacactacgca 5311260  T
Q  377 aaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttctccagttgtctt 452  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  5311259 aaacaactgtttcaatggtaagtcctggtccaaaaccaaataatacaccccactcaagtccttctcccgttgtctt 5311184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 341 - 452
Target Start/End: Original strand, 46706212 - 46706323
Alignment:
Q  341 aaaataaacaagcatctcatatagccatgctgcgcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttc 440  Q
    |||||||  |||||| ||||||||| |  ||| |||||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  46706212 aaaataattaagcatttcatatagcgacactgtgcaaaacaacagtttctatggtaagtcctggtccaaagccaaataacacaccccattcaagtccttc 46706311  T
Q  441 tccagttgtctt 452  Q
    ||| ||||||||    
T  46706312 tcctgttgtctt 46706323  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 325
Target Start/End: Complemental strand, 5285276 - 5285233
Alignment:
Q  282 aacattagatgaaattccatcattacataaaaattaaacaaatt 325  Q
    |||| ||||||||||| |||| ||||||||||||||||||||||    
T  5285276 aacactagatgaaatttcatccttacataaaaattaaacaaatt 5285233  T

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Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 341 - 452
Target Start/End: Complemental strand, 1505875 - 1505764
Alignment:
Q  341 aaaataaacaagcatctcatatagccatgctgcgcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttc 440  Q
    |||||||  |||||||||||||||| |  || ||||||||||| |||||||| |||||||| |||||||| |||||||| |||||||||||| |||||||    
T  1505875 aaaataattaagcatctcatatagcaacactacgcaaaacaacagtttcaatagtaagtcccggtccaaagccaaataacacaccccattcatgtccttc 1505776  T
Q  441 tccagttgtctt 452  Q
    ||| || |||||    
T  1505775 tccggtagtctt 1505764  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 350 - 452
Target Start/End: Complemental strand, 1493057 - 1492955
Alignment:
Q  350 aagcatctcatatagccatgctgcgcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttctccagttgt 449  Q
    |||||||| ||||||| |  |||||||| ||||| || ||||||||||||||||||||||| || ||||  |||||||||||| | |||||||| |||||    
T  1493057 aagcatcttatatagctacactgcgcaagacaacagtctcaatggtaagtcctggtccaaagccgaatagcacaccccattcatgcccttctccggttgt 1492958  T
Q  450 ctt 452  Q
    |||    
T  1492957 ctt 1492955  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 357 - 452
Target Start/End: Complemental strand, 1483075 - 1482980
Alignment:
Q  357 tcatatagccatgctgcgcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttctccagttgtctt 452  Q
    |||||||||||  ||| |||||||||| ||||||||||||||||| |||||||| || || || |||||||| ||||| |||||||| || |||||    
T  1483075 tcatatagccacactgtgcaaaacaacggtttcaatggtaagtccaggtccaaagccgaacaacacaccccaatcaagcccttctcctgtggtctt 1482980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 443
Target Start/End: Complemental strand, 1487559 - 1487466
Alignment:
Q  350 aagcatctcatatagccatgctgcgcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttctcc 443  Q
    |||||||||||||| |||| ||  | | |||||| ||||||||||||||||| |||||||| || || || || ||||||| ||||||||||||    
T  1487559 aagcatctcatataaccatactatggagaacaacagtttcaatggtaagtccaggtccaaagccgaacaacactccccatttaagtccttctcc 1487466  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 440
Target Start/End: Complemental strand, 1500105 - 1500039
Alignment:
Q  374 gcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttc 440  Q
    |||||||||| ||||||||||||||||| |||||||| |  || ||||||||||||||  |||||||    
T  1500105 gcaaaacaacagtttcaatggtaagtccaggtccaaagcttaacaatacaccccattcttgtccttc 1500039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 1478860 - 1478798
Alignment:
Q  378 aacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttc 440  Q
    |||||| ||||||||||| ||||| |||||||| ||||| || |||||||| ||||| |||||    
T  1478860 aacaactgtttcaatggtgagtccaggtccaaagccaaacaacacaccccagtcaaggccttc 1478798  T

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Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 341 - 452
Target Start/End: Complemental strand, 44129472 - 44129361
Alignment:
Q  341 aaaataaacaagcatctcatatagccatgctgcgcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttc 440  Q
    |||||||  ||||| |||||||||| |  |||||||||||||| |||||||| ||||| ||||||||||| |||||||| |||||||| |||||||||||    
T  44129472 aaaataattaagcacctcatatagcgacactgcgcaaaacaacagtttcaatagtaagacctggtccaaagccaaataaaacaccccactcaagtccttc 44129373  T
Q  441 tccagttgtctt 452  Q
    ||| || |||||    
T  44129372 tcccgtggtctt 44129361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 341 - 452
Target Start/End: Complemental strand, 44133677 - 44133566
Alignment:
Q  341 aaaataaacaagcatctcatatagccatgctgcgcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttc 440  Q
    |||||||| ||||| |||||||||| || || ||||||||||| |||||||||||||| || |||||||| |||||||| |||||  |||||||||||||    
T  44133677 aaaataaataagcacctcatatagcgatacttcgcaaaacaacagtttcaatggtaagacccggtccaaagccaaataaaacaccaaattcaagtccttc 44133578  T
Q  441 tccagttgtctt 452  Q
    ||| || |||||    
T  44133577 tcctgtggtctt 44133566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 341 - 452
Target Start/End: Complemental strand, 44142099 - 44141988
Alignment:
Q  341 aaaataaacaagcatctcatatagccatgctgcgcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttc 440  Q
    |||||||  ||||| |||||||||| |  ||||| |||||||| |||||||||||||| || |||||||| |||||||| |||||  | |||||||||||    
T  44142099 aaaataattaagcacctcatatagcgacactgcgtaaaacaacagtttcaatggtaagacccggtccaaagccaaataaaacaccaaactcaagtccttc 44142000  T
Q  441 tccagttgtctt 452  Q
    ||| || |||||    
T  44141999 tcccgtggtctt 44141988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 349 - 453
Target Start/End: Original strand, 24163022 - 24163126
Alignment:
Q  349 caagcatctcatatagccatgctgcgcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttctccagttg 448  Q
    ||||||| |||||||||||  ||| | | ||||| ||||||||||||||||||||| ||||| |  || || |||||||||||||| |||||||| || |    
T  24163022 caagcatatcatatagccacactgtggagaacaatcgtttcaatggtaagtcctggcccaaagcttaacaacacaccccattcaagcccttctcctgtgg 24163121  T
Q  449 tcttt 453  Q
    |||||    
T  24163122 tcttt 24163126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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