View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13992_low_6 (Length: 277)
Name: NF13992_low_6
Description: NF13992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13992_low_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 277
Target Start/End: Original strand, 27984968 - 27985227
Alignment:
| Q |
12 |
aagaaccaaaatcttgccacaatctcatgcttacggtgccacaatttttctagaacttcaacatccagttttgagccaaatttcaacatatataatttcg |
111 |
Q |
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| T |
27984968 |
aagaaccaaaatcttgccacaatctcatgcttacggtgccacaatttttctagaacttcaacatccagttttgagccaaatttcaacatatataatctcg |
27985067 |
T |
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| Q |
112 |
cccccgccattcaaattttttggatccgttcctggtcaaacacatattctcatccctatatattcttatgttgtttttgtcaacctcttaactaaaattc |
211 |
Q |
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| T |
27985068 |
cccccaccattcaaattttttggatccgttcctggtcaaacacataatctcatccc--tatattcttaggttg-ttttgtcaacctctcaactaaaattc |
27985164 |
T |
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| Q |
212 |
aaatcacgtgcgaattgtgtttatttattgctgttattaatattattgttttccctgtaacgatag |
277 |
Q |
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| T |
27985165 |
aaatcacgtgcgaattttgtata---gttgttgttattaatattattgttttccatgaaacgatag |
27985227 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 35109120 - 35109077
Alignment:
| Q |
57 |
ttttctagaacttcaacatccagttttgagccaaatttcaacat |
100 |
Q |
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| T |
35109120 |
ttttcgagaacttcaacatctaattttgagccaaatttcaacat |
35109077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 23479605 - 23479677
Alignment:
| Q |
26 |
tgccacaatctcatgcttacggtgccacaatttttctagaacttcaacatccagttttgagccaaatttcaaca |
99 |
Q |
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| T |
23479605 |
tgccacaatctcattctcacg-tgccactgcttttccagaacttcaacatccaattttgatccaaatatcaaca |
23479677 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 31512899 - 31512820
Alignment:
| Q |
14 |
gaaccaaaatcttgccacaatctcatgcttacggtgccacaatttttctagaacttcaacatccagttttgagccaaattt |
94 |
Q |
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| T |
31512899 |
gaaccaaaatcgtgccacaatcgcatgttcatg-tgccacgatttttccaaaacttcaacatataattttgagccaaattt |
31512820 |
T |
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