View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13992_low_7 (Length: 254)
Name: NF13992_low_7
Description: NF13992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13992_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 27985492 - 27985258
Alignment:
| Q |
18 |
ctttgaatttttgcatgcttttagaattcctaatgctccatcaatggttctttttatcacaatttcctctggctctttcagttcaaaatcaactggagta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27985492 |
ctttgaatttttgcatgcttttagaattcctaatgccccatcaatggttctttttatcacaatttcctctggttctttcagttcaaaatcaactggagta |
27985393 |
T |
|
| Q |
118 |
gctgtgtggaatactccaatgcacccttcaattgctgcattaaaactctcagggttgctaagatcagcattgaaaatatttagcttttgggttgcatttg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||| | |||||||| |
|
|
| T |
27985392 |
gctgtgtggaatactccaatgcacccttcaattgctgcattgaaactttcagggttgctaagatcagcattgaaaatttgtagcttttgagatgcatttg |
27985293 |
T |
|
| Q |
218 |
gaagatttgtgaggaagctaacatctttattttgc |
252 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||| |
|
|
| T |
27985292 |
gaagatctgtgaggaagctaacatctttcttttgc |
27985258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 27994674 - 27994440
Alignment:
| Q |
18 |
ctttgaatttttgcatgcttttagaattcctaatgctccatcaatggttctttttatcacaatttcctctggctctttcagttcaaaatcaactggagta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| || |||| |||||||||||||| ||||||| |
|
|
| T |
27994674 |
ctttgaatttttgcatgcttttagaattcctaatgctccatcaatggttctttttgtcactatttcctcaggttcttccagttcaaaatcaattggagta |
27994575 |
T |
|
| Q |
118 |
gctgtgtggaatactccaatgcacccttcaattgctgcattaaaactctcagggttgctaagatcagcattgaaaatatttagcttttgggttgcatttg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27994574 |
gctgtgtggaatactccaatgcacccttcaattgctgcattaaaactctttgggttgctaagatcagcattgaaaatatttaacttttgggttgcatttg |
27994475 |
T |
|
| Q |
218 |
gaagatttgtgaggaagctaacatctttattttgc |
252 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||| |
|
|
| T |
27994474 |
gaagattggtgaggaagctaacatctttgttttgc |
27994440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 27959184 - 27958951
Alignment:
| Q |
18 |
ctttgaatttttgcatgcttttagaattcctaatgctccatcaatggttctttttatcacaatttcctctggctctttcagttcaaaatcaactggagta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| | || ||| ||||||||||| ||||||| |
|
|
| T |
27959184 |
ctttgaatttttgcatgcttttagaattcctaatgctccatcaatggttctttttgtcactatttcctcccgttcgttctcttcaaaatcaattggagta |
27959085 |
T |
|
| Q |
118 |
gctgtgtggaatactccaatgcacccttcaattgctgcattaaaactctcagggttgctaagatcagcattgaaaatatttagcttttgggttgcatttg |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||| ||||||||| |||||||| | ||| ||||| | |||||||| |
|
|
| T |
27959084 |
gctgtgtggaatattccaatgcacccttcaattgctgcatcgaaactttctgggttgcaaagatcagcgttgaaaatttgtaggttttgagatgcatttg |
27958985 |
T |
|
| Q |
218 |
gaagatttgtgaggaagctaacatctttattttg |
251 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||| |
|
|
| T |
27958984 |
gaagatttgtgaggtagctaacatctttcttttg |
27958951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 28013352 - 28013125
Alignment:
| Q |
18 |
ctttgaatttttgcatgcttttagaattcctaatgctccatcaatggttctttttatcacaatttcctctggctctttcagttcaaaatcaactggagta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| |||| |||| || |||| ||| ||||||| ||||||| |
|
|
| T |
28013352 |
ctttgaatttttgcatgcttttagaattcctaatgttccatcaattgttctttttgtcactgtttcttctgattcattcatttccaaatcaattggagta |
28013253 |
T |
|
| Q |
118 |
gctgtgtggaatactccaatgcacccttcaattgctgcattaaaactctcagggttgctaagatcagcattgaaaatatttagcttttgggttgcatttg |
217 |
Q |
| |
|
|| |||||||||| ||||||||| ||||||||||||||||| ||||| || ||| | || ||||||||| |||| | ||||||||||||| |||| || |
|
|
| T |
28013252 |
gcagtgtggaatattccaatgcatccttcaattgctgcattgaaactttctgggatacttagatcagcactgaagaattttagcttttgggatgcacctg |
28013153 |
T |
|
| Q |
218 |
gaagatttgtgaggaagctaacatcttt |
245 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
28013152 |
gaagatttgtgaggaagctaacatcttt |
28013125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 28005413 - 28005186
Alignment:
| Q |
18 |
ctttgaatttttgcatgcttttagaattcctaatgctccatcaatggttctttttatcacaatttcctctggctctttcagttcaaaatcaactggagta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||| |||| || |||| ||| | ||| | |||| | |
|
|
| T |
28005413 |
ctttgaatttttgcatgcttttagaattcctaatgctccatcaattgttctttttgtcactgtttcttctgattcgttcatttccatatccattggactt |
28005314 |
T |
|
| Q |
118 |
gctgtgtggaatactccaatgcacccttcaattgctgcattaaaactctcagggttgctaagatcagcattgaa-aatatttagcttttgggttgcattt |
216 |
Q |
| |
|
|| |||||||||| || |||||||||||||||||||| ||||| || ||| | || ||||||||| ||| |||| |||||||||| | |||| | |
|
|
| T |
28005313 |
gcagtgtggaatatgcctgaacacccttcaattgctgcattgaaactttctgggatacttagatcagcaccgaagaata-ttagcttttgagatgcacct |
28005215 |
T |
|
| Q |
217 |
ggaagatttgtgaggaagctaacatcttt |
245 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
28005214 |
ggaagatttgtgaggaagctaacatcttt |
28005186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University