View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13992_low_8 (Length: 244)
Name: NF13992_low_8
Description: NF13992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13992_low_8 |
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| [»] scaffold0466 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 32972832 - 32972701
Alignment:
| Q |
10 |
attattcttcatgtttgagacataatagacatttgaaataaaatcaggtcttcaatatttcaagtaaattaagatattatcttcattttttactggaatc |
109 |
Q |
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| T |
32972832 |
attattcttcatgtttgagacataatagacatttgaaataaaatcacgtcttcaatatttcaagtaaattaagatattatcttcgttttttactggaatc |
32972733 |
T |
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| Q |
110 |
tatgaaccatcctcaaatgagagatttcaact |
141 |
Q |
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| T |
32972732 |
tatgaatcatcctcaaatgagagatttcaact |
32972701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 32972207 - 32972146
Alignment:
| Q |
168 |
ttttatttcctcaattgtcacaacaatattctcaaaattgatatccaaccagggcaatattt |
229 |
Q |
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| T |
32972207 |
ttttatttcctcaattgtcacaacaatattctcaaaattgatatccaaccaggggaatattt |
32972146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 5520 - 5440
Alignment:
| Q |
12 |
tattcttcatgtttgagacataatagacatttgaaataaaatcaggtcttcaatatttcaagtaaattaagatattatctt |
92 |
Q |
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| T |
5520 |
tattctttaagtttgggacataatagacatttgaaatcaactcaggtcatccatttttcaaacaaattaagatattatctt |
5440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 25621129 - 25621209
Alignment:
| Q |
12 |
tattcttcatgtttgagacataatagacatttgaaataaaatcaggtcttcaatatttcaagtaaattaagatattatctt |
92 |
Q |
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| T |
25621129 |
tattctttaagtttgggacataatagacatttgaaatcaactcaagtcatccatttttcaaacaaattaagatattatctt |
25621209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 25662448 - 25662527
Alignment:
| Q |
13 |
attcttcatgtttgagacataatagacatttgaaataaaatcaggtcttcaatatttcaagtaaattaagatattatctt |
92 |
Q |
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| T |
25662448 |
attctttaagtttgggacatgatagacatttgaaatcaactcaggtcatccatttttcaaacaaattaagatattatctt |
25662527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 25808618 - 25808698
Alignment:
| Q |
12 |
tattcttcatgtttgagacataatagacatttgaaataaaatcaggtcttcaatatttcaagtaaattaagatattatctt |
92 |
Q |
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| T |
25808618 |
tattctttaagtttgggatataatagacatttgaaatcaactcaggtcatccatttttcgaacaatttaagatattatctt |
25808698 |
T |
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