View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13993_high_17 (Length: 395)
Name: NF13993_high_17
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 22 - 380
Target Start/End: Original strand, 24234807 - 24235169
Alignment:
| Q |
22 |
tataaacatatatacgtggt-tttaaaaaattgcatgaatcttactcatcttctggagttctgtcccagatcgaggactagtgaactagttatatccaaa |
120 |
Q |
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| T |
24234807 |
tataaacatatatacgtggactttaaaaaattacatgaatcttactcatcttctggagttctgtcccaaatcgaggactagtgaactagttatatccaag |
24234906 |
T |
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| Q |
121 |
catttcctagtagatgtagacatgatcctaaaacataagaggctatatttgcgcaaaaccaagagacacgaacttggtaactttggacatacatggctca |
220 |
Q |
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|||||| | |||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24234907 |
catttcttcgtagatgtagacatgatcctaaaatacaagaggctatatttgcgcaaaactaagagacacgaacttggtaactttggacatacatggctca |
24235006 |
T |
|
| Q |
221 |
attgttgagatgcataagagctaaacaaaggggcccttgtcgatcatgtatataaattatggctattattttttgcatcct-atgagtttgtcgtg-ttt |
318 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | | |||||||| ||||| | |
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| T |
24235007 |
attgttgaaatgcataagagctaaacaaaggggcccttgtcgatcatgtatataaattatggctattgcttttcaaaacttaatgagtttctcgtgcgct |
24235106 |
T |
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| Q |
319 |
ttattcagattctaaaatcataaaaa-ttttaacgtgtttttgaggttttatgaagtgtttat |
380 |
Q |
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||||| |||||||||||| |||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
24235107 |
ctattcggattctaaaatcctaaaaagttttaacgtgtttctgaggttttatgaagtgtttat |
24235169 |
T |
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