View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13993_high_19 (Length: 347)

Name: NF13993_high_19
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13993_high_19
NF13993_high_19
[»] chr5 (1 HSPs)
chr5 (247-330)||(11113692-11113776)
[»] chr4 (1 HSPs)
chr4 (247-287)||(48294563-48294603)
[»] chr7 (1 HSPs)
chr7 (214-286)||(29616670-29616741)


Alignment Details
Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 11113776 - 11113692
Alignment:
Q  247 tttcaagaggtttgtgaatctggggttt-caatacacaaaagaggaaaacccaattgatttcgattttgcgataccagtgcataa 330  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11113776 tttcaagaggtttgtgaatctggggttttcaatacacaaaagaggaaaacccaattgatttcgattttgcgattccagtgcataa 11113692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 48294603 - 48294563
Alignment:
Q  247 tttcaagaggtttgtgaatctggggtttcaatacacaaaag 287  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  48294603 tttcaagaggtttgtgaatgtggggtttcaatacacaaaag 48294563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 29616670 - 29616741
Alignment:
Q  214 gtttgccatcaaaaaatgattaagtgtttagggtttcaagaggtttgtgaatctggggtttcaatacacaaaa 286  Q
    |||||||||  |||||| ||||| | |||||||||||||||||||||    | ||||||||||||||||||||    
T  29616670 gtttgccatggaaaaat-attaattctttagggtttcaagaggtttgcagctttggggtttcaatacacaaaa 29616741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University