View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13993_high_24 (Length: 324)
Name: NF13993_high_24
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 8375123 - 8374807
Alignment:
| Q |
1 |
aacataaattagctgctgctgagatttgtaaacaaaccatgtattg-----atgagaattgagagctgaaaaaatttgtgtatgaattgtagatgagagt |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8375123 |
aacataaattagctgctgctgagatttgtaaacaaaccatgtattgtattgatgagaattgagagcttaaaaaatttgtgtatgaattgtagatgagagt |
8375024 |
T |
|
| Q |
96 |
ttattgttttannnnnnngataaaagatgagtgtttatgaaaacaatgaatgggagtgagtggtatatatatagacagaggaatgaaatggatcaaaatt |
195 |
Q |
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| T |
8375023 |
ttattgttttatttttttgataaaagatgagagtttatgaaaacaatgaatgggagtgagtggtatatatatagacagaggaatgaaatggatcaaaatt |
8374924 |
T |
|
| Q |
196 |
agaatagatgggaagaagtcatgagcaaccgtaacattagattagacttggcctttttattgactttctatgtattctctaattaataaatttcaacaag |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8374923 |
agaatagatgggaagaagtcatgagcaaccgtaacattagattagacttggcctttttattgactttctatgtattctctaattaataaatttcaacaag |
8374824 |
T |
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| Q |
296 |
tttggctgcctttgctt |
312 |
Q |
| |
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|||||||||||| |||| |
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| T |
8374823 |
tttggctgccttggctt |
8374807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 8439980 - 8440083
Alignment:
| Q |
1 |
aacataaattagctgctgctgagatttgtaaacaaaccatgta-----ttgatgagaattgagagctgaaaaaatttgtgtatgaattgtagatgagagt |
95 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8439980 |
aacataaattagctgctgctgagatttgtaaacaaaccatgtattgtattgatgagaattgagagcttaaaaaatttgtgtatgaattgtagatgagagt |
8440079 |
T |
|
| Q |
96 |
ttat |
99 |
Q |
| |
|
|||| |
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|
| T |
8440080 |
ttat |
8440083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 120 - 287
Target Start/End: Original strand, 8440070 - 8440230
Alignment:
| Q |
120 |
agatgagtgtttatgaaaacaatgaatgggagtgagtggtatatatatagacagaggaatgaaatggatcaaaattagaatagatgggaagaagtcatga |
219 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||||||||||| || |||| |||||||||||| |||||||||||||||||||||| | |
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| T |
8440070 |
agatgagagtttatgaaaacaatgaatgggagtgggtggtatatatatagatag-ggaagagaatggatcaaaactagaatagatgggaagaagtcacaa |
8440168 |
T |
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| Q |
220 |
gcaaccgtaacattagattagacttggcctttttattgac-tttctatgtattctctaattaataaatt |
287 |
Q |
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| T |
8440169 |
ctaaccgta-----agattagacttggcctttttattgacttttctatgtat--tctaattaataaatt |
8440230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 8418014 - 8418062
Alignment:
| Q |
4 |
ataaattagctgctgctgagatttgtaaacaaaccatgtattgatgaga |
52 |
Q |
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||||||||||||||||||||| ||||| || |||||||||||||||||| |
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| T |
8418014 |
ataaattagctgctgctgagaattgtatactaaccatgtattgatgaga |
8418062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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