View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13993_high_36 (Length: 241)
Name: NF13993_high_36
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 40735685 - 40735908
Alignment:
| Q |
5 |
caagtaaccctataaatacccaacctcagtctcttccacgacacttccgaagtcctagaaccttctcgcaaaattttcttnnnnnnnnnnn------tcc |
98 |
Q |
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| T |
40735685 |
caagtaaccctataaatacccaacctcagtctcttccacgacacttccgaagtcctagaaccttctcgcacaattttcttaaaaaaaaaaaaaaaaatcc |
40735784 |
T |
|
| Q |
99 |
caaacatgtttcttatctaaagtctaaaatttcacaattctcaaaccctaagtcccaaatttctcatcaatttcaaaaattatctctgttttctatcaaa |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40735785 |
caaacatgtttcttatctaaagtctaaaatttcacaattctcaaaccctaagtcccaaatttctcatcaatttcaaaaattatctctgttttccatcaaa |
40735884 |
T |
|
| Q |
199 |
caatggaagaaaccgctttctacc |
222 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
40735885 |
caatggaagaaaccgctttctacc |
40735908 |
T |
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