View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13993_high_40 (Length: 231)
Name: NF13993_high_40
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_high_40 |
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Alignment Details
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 21543790 - 21543949
Alignment:
| Q |
13 |
attattctatcagcatgacacacatcaaaaccaaaacatgtaaggttcatgtgagacattattcatccactaaccactagcaagcttacatatgaaagat |
112 |
Q |
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| T |
21543790 |
attattctatcagcatgacatacatcaaaaccaaaacatgtaaagctcatgtgagacaatattcatccaccaaccactagcaagcttaaatatgtaagat |
21543889 |
T |
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| Q |
113 |
gaatagaagagtgtaaagcaaaggatattcttaattggaaatttaaaatagaacgataga |
172 |
Q |
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| T |
21543890 |
taataaaagaatgtaaagcaaaggatattcttaattggaaactaaaaatataacgataga |
21543949 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 185
Target Start/End: Complemental strand, 1972414 - 1972324
Alignment:
| Q |
96 |
gcttacatatgaaagatgaatagaagagtgtaaagcaaaggatattctt-aattggaaatttaaaatagaacgatagagatgtaatcacaa |
185 |
Q |
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||||||||||||||||||||||||| | |||||||||||| ||| || || ||| |||| ||||||||||||||||||||||| ||||| |
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| T |
1972414 |
gcttacatatgaaagatgaatagaacaacataaagcaaaggaaatttttaaaatgggaattcaaaatagaacgatagagatgtaaccacaa |
1972324 |
T |
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