View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13993_high_5 (Length: 522)
Name: NF13993_high_5
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 7037387 - 7036882
Alignment:
| Q |
1 |
tcatatgttgatgaggaggtctgtggagttgagtttgttcacaagtttcaaatttgatgatgaaggctatgctcgcctacaatacacagattatatgtta |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7037387 |
tcatatgttgatgaggagatctgtggagttgagtttgttcacaagtttcaaatttgatgatgaaggctatgctcgcctacaatacacagattatatgtta |
7037288 |
T |
|
| Q |
101 |
atcattggaggaaagggatgggggaatattcgaattataaaggaaaaataggatcttcaccttttaagtatcttaggctacctggcaaccagttatagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7037287 |
atcattggaggaaagggatgggggaatattcgaattataaaggaaaaataggatcttcaccttttaagtatcttaggctacctggcaaccagttatagat |
7037188 |
T |
|
| Q |
201 |
gcggtttgtttaatattgtcaaattggaagaataatcagttgtccatcggtggttgcatggttattattaaatcaggattgtcagctctcctagtctatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7037187 |
gcggtttgtttaatattgtcaaattggaagaataatcagttgtccatcggtggttgcatggttattattaaatcaggattgtcagctctcctagtctatt |
7037088 |
T |
|
| Q |
301 |
ttctctctttttattcccaatagaagagggggattgggaataaataatttggggatttaatgcccttctaggaaaatgaaagttgaaattaagaaatgag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7037087 |
ttctctctttttattcccaatagaagagggggattgggaataaataatttggggatttaatgcccttctaggaaaatgaaagttgaaattaagaaatgag |
7036988 |
T |
|
| Q |
401 |
ggtttttggcattggtacagtgttctatcaaatagatatggtgagaaagagatggggtgtttagagagggttggagaggcaattcggtatggtggaacga |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7036987 |
ggtttttggcattggtacagtgttctatcaaatagatatggtgagaaagagatggggtgtttagagagggttggagaggcaattcggtatggtggaacga |
7036888 |
T |
|
| Q |
501 |
tatatg |
506 |
Q |
| |
|
|||||| |
|
|
| T |
7036887 |
tatatg |
7036882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University