View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13993_low_1 (Length: 778)
Name: NF13993_low_1
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 35210917 - 35211157
Alignment:
| Q |
18 |
acaatcaccatagtatattccaagtgctgctgatgctgcaaagttgtaccatcccataccaaaataattagaatattcattctcattctttaataaaata |
117 |
Q |
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| T |
35210917 |
acaatcaccatagtatattccaagtgctgctgatgctgcaaagttgtaccatcccataccaaaataattagaatattcattctcattctttaataaaata |
35211016 |
T |
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| Q |
118 |
acaatatttacacaaaatgaatggggggtgaacataaagttatcaatt----------------taaacaatctcaatactaatactatcctcatcaaat |
201 |
Q |
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| T |
35211017 |
acaatatttacacaaaatgaatggggggtgaacataaagttatcaatttaggcaccaggttacctaaacaatctcaatactaatactatcctcatcaaat |
35211116 |
T |
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| Q |
202 |
acgttgtgtcctttcttaaaacacaagaggtaaataaacca |
242 |
Q |
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| T |
35211117 |
acgttgtgtcctttcttaaaacacaagaggtaaataaacca |
35211157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 330 - 563
Target Start/End: Original strand, 35211245 - 35211478
Alignment:
| Q |
330 |
cctacgcctaagaatcaaagaaaagtttttaaactcatgcatctcataagaattaaatttcacactatannnnnnnnaattaaatacaaataaatgtttg |
429 |
Q |
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| T |
35211245 |
cctacgcctaagaatcaaagaaaagtttttaaactcatgcatctcataagaattaaatttcacactatattttttttaattaaatacaaataaatgtttg |
35211344 |
T |
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| Q |
430 |
gtgcttatataaagtggggtattgtctttaaaatactcnnnnnnnnnnnagaaaaactaaaaagataagtgtcatgctaccataggtcctaaatacatat |
529 |
Q |
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| T |
35211345 |
gtacttatataaagtggggtattgtatttaaaatactctttttttttttagaaaaactaaaaagataagggccatgctaccataggtcctaaatacatat |
35211444 |
T |
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| Q |
530 |
cttattaggaattcaacaaatagtaagttattga |
563 |
Q |
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| T |
35211445 |
cttattaggaattcaacaaatagtaaggtattga |
35211478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 634 - 761
Target Start/End: Original strand, 35211585 - 35211706
Alignment:
| Q |
634 |
tgctagtacacacccaacgtttatttatctttttgaatatctaatgaaaacttttattttagggaatgaaaaccatttattaaccattaagagtcttgtc |
733 |
Q |
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| T |
35211585 |
tgctagtacacacccaacgtttattt------ttgaatgtctaatgaaaacttttattttagggaatgaaaaccatttattaaccattaagagtcttgtc |
35211678 |
T |
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| Q |
734 |
aaaagaacgaacatgaagaataatttag |
761 |
Q |
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| T |
35211679 |
aaaagaacgaacatgaagaataatttag |
35211706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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