View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13993_low_10 (Length: 488)
Name: NF13993_low_10
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 13714078 - 13714544
Alignment:
| Q |
1 |
agtttaataccaattccaagacatcagcaagttgtggtctcgaacaacaaactgagcatgaatcattgggtgaaacaggaccatggatggcttaaactca |
100 |
Q |
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| T |
13714078 |
agtttaataccaattccaagacatcagcaagttgtgatctcgaacaacaaactgagcatgaatcattgggtgaaacaggaccatggatggcttaaactca |
13714177 |
T |
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| Q |
101 |
atgtagatgtcgccttccct-attcagcaagctttacaacttttgggtgttgtgtctgtaactcaaatggtcactttgtcatggctcacacgcgcgatgg |
199 |
Q |
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| T |
13714178 |
atgtagatgtcgccttccctcattcagcaagctttacaacttttgggtgttgtgtctgtaactcaaatggtcactttgtcatggctcacacgcacgatag |
13714277 |
T |
|
| Q |
200 |
aagcaaatatgtatgtcagtccttgaaggtgaagcgttggcattgttggatgttatttgattagttgccagcaaaagggtggcaaaacacgatctttgac |
299 |
Q |
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| T |
13714278 |
aagcaaatgtgtatgccagtccttgaaggtgaagtgttggcattgttggatgttattcgattagttgccagcaaaagggtgggaaaacacgatctttgac |
13714377 |
T |
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| Q |
300 |
ttagattcctatactttggtagaggctgttatgacccaacgtcaagggtttctgagttttattatgccattacttcttctatcaataacgagctagtttt |
399 |
Q |
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| T |
13714378 |
ttagattcctatactttggtacaggctgttatgacccaacgtcaagggtttctgagttttattatgccattacttcttctatttataacgagctagtttt |
13714477 |
T |
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| Q |
400 |
acgttctaactttgagatgaagtttgtaaggcgacaaacaaacatgtttgctcatagtctaactaagg |
467 |
Q |
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| T |
13714478 |
acgttctaactttgagatgaa-tttgtaaggcggcaaacaaacacgtttgctcatagtctagctaagg |
13714544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 455
Target Start/End: Complemental strand, 31908373 - 31908325
Alignment:
| Q |
407 |
aactttgagatgaagtttgtaaggcgacaaacaaacatgtttgctcata |
455 |
Q |
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| T |
31908373 |
aactttgagatgaagtttgttagtcgataaacaaacatggttgctcata |
31908325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 8670305 - 8670245
Alignment:
| Q |
393 |
tagttttacgttctaactttgagatgaagtttgtaaggcgacaaacaaacatgtttgctca |
453 |
Q |
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| T |
8670305 |
tagttttacatcccaactttgaggtaaagtttgttaggcgacaaacaaacatggttgctca |
8670245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 444
Target Start/End: Original strand, 23151040 - 23151078
Alignment:
| Q |
406 |
taactttgagatgaagtttgtaaggcgacaaacaaacat |
444 |
Q |
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| T |
23151040 |
taactttgaggtgaagtttgtaaggcgtcaaacaaacat |
23151078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 464
Target Start/End: Original strand, 2615682 - 2615750
Alignment:
| Q |
396 |
ttttacgttctaactttgagatgaagtttgtaaggcgacaaacaaacatgtttgctcatagtctaacta |
464 |
Q |
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| T |
2615682 |
ttttacattccaacctcgagatgaagtttgttaggagacaaacgaacatggttgctcatactttaacta |
2615750 |
T |
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