View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13993_low_13 (Length: 431)
Name: NF13993_low_13
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 52344112 - 52343868
Alignment:
| Q |
18 |
gttgtgtgccaacttgttgtctgagagtgatgggaattgtgtgaatcaattaatcatttcggtggttcctttcgtcattaatggtggatgagaaagagag |
117 |
Q |
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| T |
52344112 |
gttgtgtgccaacttgttgtctgagagtgatgggaattgtatgaatcaattaatcatttcggtggttcctttcgtcattaatggtggatgagaaagagag |
52344013 |
T |
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| Q |
118 |
gaaaggagggaaagagcgagggtgagagagtggggaagtttctaatacaacataaacttatgatagaaatcacaaatgtcagacagataggattaagaaa |
217 |
Q |
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| T |
52344012 |
gaaaggagggaaagagcgagggtgagagagtggggaagtttctaatacaacataaacttgtgatagaaatcacaaatgtcagacagataggattaagaaa |
52343913 |
T |
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| Q |
218 |
aggaaaatgtttaatttatcatatcatttggtgcgtcaaagggaa |
262 |
Q |
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| T |
52343912 |
aggaaaatgtttaatttatcatatcctttggtgcgtcaaacggaa |
52343868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 286 - 423
Target Start/End: Complemental strand, 52343655 - 52343512
Alignment:
| Q |
286 |
atcaaacaataaaaatgcaaataaaaaggttaaaatatctgaatttggtatctgtaac------catgtaaaggaatnnnnnnnnntgagggtaacttgg |
379 |
Q |
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| T |
52343655 |
atcaaacaataaaaatgcaaataaaaaggttaaaatctctgaatttggtatctgtaactgtaaccatgtaaaggaataaaaaaaaatgagggtaacttgg |
52343556 |
T |
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| Q |
380 |
ctttatatataggagtgtgttcaaagttgttagtattatctacc |
423 |
Q |
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| T |
52343555 |
ctttatatataggagtgtgttcaaagttgttaatattatctacc |
52343512 |
T |
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