View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13993_low_14 (Length: 422)
Name: NF13993_low_14
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 363
Target Start/End: Original strand, 32954239 - 32954585
Alignment:
| Q |
17 |
aaattcaaagttaggctcaaggaaacttttttccctgatgatcctttacgccaattcaaaggacaaacacttcaaaaaagactaatcttaggagctaaat |
116 |
Q |
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| T |
32954239 |
aaattcaaagttaggctcaaggaaacttttttccctgatgatcctttacgccaattcaaaggacaaacacttcaaaaaagactaatcttaggagctaaat |
32954338 |
T |
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| Q |
117 |
attttttccctattcttcaatggggttctatttatagcttcaaactctttaaatctgaccttgtttctggtctcactattgctagcttagccatcccaca |
216 |
Q |
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| T |
32954339 |
attttttccctattcttcaatggggttctatttatagcttcaaactctttaaatctgaccttgtttctggtctcactattgctagcttagccatcccaca |
32954438 |
T |
|
| Q |
217 |
ggtttgtcaaatttgataagtactcatgaaaataattaattaccacccttttgaacttaacttattcaattatgtaacttgtttattagggaattagtta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32954439 |
ggtttgtcaaatttgataagtactcatgaaaataattaattaccacccttttgaacttaacttattcaattatgtaacttgtttattagggaattagtta |
32954538 |
T |
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| Q |
317 |
tgccaagcttgcaaatcttcctccaattgttggactatgtaagtgta |
363 |
Q |
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| T |
32954539 |
tgccaagcttgcaaatcttccaccaattgttggactatgtaagtgta |
32954585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 220
Target Start/End: Original strand, 32965507 - 32965694
Alignment:
| Q |
33 |
tcaaggaaacttttttccctgatgatcctttacgccaattcaaaggacaaacacttcaaaaaagactaatcttaggagctaaatattttttccctattct |
132 |
Q |
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| T |
32965507 |
tcaaggaaacatttttccctgatgatcctatgcgacaattcaagggacaaccatgtaacagaaaattaatccttggagctcaatatttttttcctattct |
32965606 |
T |
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| Q |
133 |
tcaatggggttctatttatagcttcaaactctttaaatctgaccttgtttctggtctcactattgctagcttagccatcccacaggtt |
220 |
Q |
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| T |
32965607 |
tcagtggttacctaattacaatttcaaactccttaaagctgaccttatatctggcctcaccattgctagcttggccatccctcaggtt |
32965694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 340
Target Start/End: Original strand, 32965759 - 32965795
Alignment:
| Q |
304 |
agggaattagttatgccaagcttgcaaatcttcctcc |
340 |
Q |
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| T |
32965759 |
agggaattagttatgccaagcttgcaagtcttcctcc |
32965795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 360
Target Start/End: Complemental strand, 38221241 - 38221190
Alignment:
| Q |
309 |
attagttatgccaagcttgcaaatcttcctccaattgttggactatgtaagt |
360 |
Q |
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| T |
38221241 |
attagttatgcaaagcttgctaaccttcctccaattcttggactttgtaagt |
38221190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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