View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13993_low_15 (Length: 422)
Name: NF13993_low_15
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 351
Target Start/End: Original strand, 31314930 - 31315265
Alignment:
| Q |
16 |
ttggaactactttacttatcatagcatctgcgatgatgttatgagagttcatactctcttctacatccttgtactcatttactttgcaannnnnnngttt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31314930 |
ttggaactactttacttatcatagcatctgcgatgatgttatgagagttcatactctcttctacatccttgtactcatttactttgcaatttttttgttt |
31315029 |
T |
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| Q |
116 |
tgttagagcgttggtggcttccatactttgtatcattccttccacatgagcttcatataacttaaatatttgcacaaccatttattcaagattggacatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31315030 |
tgttagagcgttggtggcttccatactttgtatcattccttccacatgagcttcatataacttaaatagttgcacaaccatttattcaagattggacatg |
31315129 |
T |
|
| Q |
216 |
tctttgttttcatactagtctttccattgagtagggcagtactcaggccatttctaaggataaaagttccttaggaggcatgtacctaacatgttcgtct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31315130 |
tctttgttttcatactagtctttccattgagtagggcagtactcaggccatttctaaggatagaagttccttaggaggcatgtacctaacatgttcgtct |
31315229 |
T |
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| Q |
316 |
gataaccccaaacttgttgggaggcatgtaccactt |
351 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
31315230 |
gataaccccaaacttgttgggaggcatgtaccactt |
31315265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 31314844 - 31314892
Alignment:
| Q |
16 |
ttggaactactttacttatcatagcatctgcgatgatgttatgagagtt |
64 |
Q |
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||||||||||||||||||||||||||| || ||| || ||||||||||| |
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| T |
31314844 |
ttggaactactttacttatcatagcatatgtgataatattatgagagtt |
31314892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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