View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13993_low_16 (Length: 422)
Name: NF13993_low_16
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 16806178 - 16806585
Alignment:
| Q |
18 |
ttatatcaagatgtcattagattctagtaatcgaaggtgttatagaataagaatttatgttggtagttgtaataatagttggttgttagaactttacgtg |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16806178 |
ttatatcaagatgtcattagattccagtaatcgaaggtgttatagaataagaatttatgttggtagttgtaata---gttggttgttagaactttacgta |
16806274 |
T |
|
| Q |
118 |
tatatgttttcattcacagaattggtcggattttannnnnnngaaggagaattggtcgagtttatattggctaaatatcttttggaccatatgagatgaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16806275 |
tatatgttttcattcacagaattggtcggattttatttttttgaaggagaattggtcgagtttatattggctaaatatcttttggaccatatgagatgaa |
16806374 |
T |
|
| Q |
218 |
tatatcaaagaatatgtcacatattctatatttatcgtcannnnnnnacaactgtagcaattaattagtgtttgtttcagttttctatctttatcttata |
317 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
16806375 |
tatgtcaaagaatatgtcacatattctatatttatcgtcatttttttacgactgtagcaattaattagtgtgtgtttcagttttctatctttatc-tata |
16806473 |
T |
|
| Q |
318 |
ttctgtttacatgcacaagaat---------------------taggtctagacatatcgtcatgtgattttgcatgtcatctctacatttttccttatt |
396 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16806474 |
ttctgtttacatgcacaagaatgaacgttatcttatattttcctaggtctagacatatcgtcatgtgattttgcatgtcatctctacatttttccttatt |
16806573 |
T |
|
| Q |
397 |
tcgaatcgtgat |
408 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
16806574 |
tcgaattgtgat |
16806585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University