View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13993_low_17 (Length: 416)
Name: NF13993_low_17
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 197 - 402
Target Start/End: Original strand, 34560964 - 34561169
Alignment:
| Q |
197 |
ttaaccaaaactccacattatctctgattcagctctctcacaacaggtaacaaagcaagcaaacaaattacattcttcttgtgtttgtgnnnnnnngagg |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34560964 |
ttaaccaaaactccacattatctctgattcagctctctcacaacaggtaacaaagtaagcaaacaaattacattcttcttgtgtttgtgtttttttgagg |
34561063 |
T |
|
| Q |
297 |
tgtcctatgtttatatttatgttcttgttctcttctttattatctttccttttacttcaaaaatcttcctcttttacttgattttgaaagatatttactg |
396 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34561064 |
tgtcctatgtttatatttatgtacttgttctcttctttattatctttccttttacttcaaaaatcttcctcttttacttgattttgaaagatatttactg |
34561163 |
T |
|
| Q |
397 |
ttactg |
402 |
Q |
| |
|
|||||| |
|
|
| T |
34561164 |
ttactg |
34561169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 34560782 - 34560878
Alignment:
| Q |
16 |
cataggctaaaagttgagtgagacttaaaacctcaatcactgacactgtctccctcacacgcggcgtagcgtactctcacttcttcgccaccaacat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34560782 |
cataggctaaaagttgagtgagacttaaaacctcaatcactgacactgtctccctcacacgcggcgtagcgtactctcacttcttcgccaccaacat |
34560878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 18395438 - 18395355
Alignment:
| Q |
23 |
taaaagttgagtgagacttaaaacctcaatcactgacactgtctccctcacacgcggcgtagcgtactctcacttcttcgccac |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18395438 |
taaaagttgagtgagacttaaaacctcaatcactgacattgtctccttcacacgcaacgtagcgtactctcacttcttcgccac |
18395355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 18395224 - 18395142
Alignment:
| Q |
203 |
aaaactccacattatctctgattcagctctctcacaacaggtaacaaagcaagcaaacaaattacattcttcttgtgtttgtg |
285 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
18395224 |
aaaactccacattaccactgattcagctctctcacaacaagtaacaaagcaagcaaacaaattacattcttcctatgtttgtg |
18395142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 18398347 - 18398259
Alignment:
| Q |
23 |
taaaagttgagtgagacttaaaacctcaatcactgacactgtctccctcacacgcggcgtagcgtactctcacttcttcgccaccaaca |
111 |
Q |
| |
|
|||||| |||||||||||||||| || |||||||||||||||||| ||||| ||| | |||||||||||||||| |||| ||| |||| |
|
|
| T |
18398347 |
taaaaggtgagtgagacttaaaatgtcgatcactgacactgtctccttcacatgcgacttagcgtactctcactttttcgtcacaaaca |
18398259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 18320336 - 18320415
Alignment:
| Q |
23 |
taaaagttgagtgagacttaaaacctcaatcactgacactgtctccctcacacgcggcgtagcgtactctcacttcttcg |
102 |
Q |
| |
|
|||||| |||||||||||||||| || |||||||||||||||||| ||||| ||| | |||||||||||||||| |||| |
|
|
| T |
18320336 |
taaaaggtgagtgagacttaaaatgtcgatcactgacactgtctccttcacatgcgacttagcgtactctcactttttcg |
18320415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 266
Target Start/End: Complemental strand, 18398144 - 18398081
Alignment:
| Q |
203 |
aaaactccacattatctctgattcagctctctcacaacaggtaacaaagcaagcaaacaaatta |
266 |
Q |
| |
|
|||||||||| ||| | || ||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
18398144 |
aaaactccacgttaccactaattcagctctctcacaacaaataacaaagtaagcaaacaaatta |
18398081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University