View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13993_low_22 (Length: 339)
Name: NF13993_low_22
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 331
Target Start/End: Complemental strand, 10561530 - 10561218
Alignment:
| Q |
19 |
acagcaccttgcctctttacactcttgtcactcaggttgggataatctatcttatcgacgtgcatcgatcaaaacgtataagctttgataaaaactctaa |
118 |
Q |
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| T |
10561530 |
acagcaccttgcctctttacactcttgtcactcaggttgggataatctatcttatcgacatgcatcgattaaaacgtataagctttgataaaaactctaa |
10561431 |
T |
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| Q |
119 |
catgtttttgttctttggtttaatctccactgaattggagcagatgggtagtaggtgtaaacttgacaaggttgatgataaggcagaaatggaatcgtct |
218 |
Q |
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| T |
10561430 |
catgtttttgttctttggtttaatctccactgaattggagcagatgggtagtaggggtaaacttgacaaggttgatgataaggcggaaatggaatcgtct |
10561331 |
T |
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| Q |
219 |
cccttgttccacagaatgaccaaagaatcaaatcaacattctcaaattaatgaacaagcgattatcatgatggaagatcatgcaatatcatctacaattg |
318 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10561330 |
cccttgttccacagaatgaccaaagaatcaaaccaacattctcaaattggtgaacaagcgattatcatgatggaagatcatgcaatatcatctacaattg |
10561231 |
T |
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| Q |
319 |
aacttcaccctat |
331 |
Q |
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||||||||||||| |
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| T |
10561230 |
aacttcaccctat |
10561218 |
T |
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