View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13993_low_24 (Length: 327)
Name: NF13993_low_24
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 326
Target Start/End: Original strand, 34144567 - 34144873
Alignment:
| Q |
17 |
cttagagcacttttattatgagataaaagaaaacaatataaaaatcaaaactgcatcaaactatggtatttgatgcctgttttagatgtccaaatannnn |
116 |
Q |
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| T |
34144567 |
cttagagcacttttattatgagataaaagaaaacaatataaaaatcaaaactgcatcaaattatggtatttgatgcctgttttagatgtccaaatatttt |
34144666 |
T |
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| Q |
117 |
nnnctcatcagcttctaaacaactacaacactaatatgtcttattat-cttgctgatgtttgggatactccaatcgccgacgcaggctcaaacgttgcgg |
215 |
Q |
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| T |
34144667 |
at-ctcatcagcttctaaacaactacaacactaatatgtcttattattcttgctgatgttggggatactccaatcgccgacgcaggctcaaacgttgcgg |
34144765 |
T |
|
| Q |
216 |
ctacccggcaatcgaacctggttgcttgtgctagtgctaccattgtcaaaagtatcagccctagaaggagcatcaacaacaggaggaacatgaggaagca |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34144766 |
ctacccggcaatcgaacctggttgcttgtgctagtgctaccattgtcaaaagtatcagccctagaaggagcat---caacaggaggaacatgaggaagca |
34144862 |
T |
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| Q |
316 |
tctgtgatcct |
326 |
Q |
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|||| |||||| |
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| T |
34144863 |
tctgggatcct |
34144873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 34154909 - 34154977
Alignment:
| Q |
44 |
agaaaacaatataaaaatcaaaactgcatcaaactatggtatttgatgcctgttttagatgtccaaata |
112 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||| ||||| | |||||||||||||||||| |
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| T |
34154909 |
agaaaacaatataaaaaccaaaactacatcaaactatggtatctgatgtcagttttagatgtccaaata |
34154977 |
T |
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