View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13993_low_26 (Length: 323)
Name: NF13993_low_26
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 41035928 - 41035610
Alignment:
| Q |
1 |
tcagatcctaaaaatctttctggtgaaaataaatcagcatcatcccatatgtttgttctaccaatagcccattcatttatctgaatttgtgcaccctttg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41035928 |
tcagatcctaaaaatctttctggtgaaaataaatcagcatcatcccatatgtttgttctaccaatagcccattcatttatccgaatttgtgcaccctttg |
41035829 |
T |
|
| Q |
101 |
gaatagtgtacactgctatttccacatctaccctagctttacgtgggagcaaaagtggagctgaagggtgtaagcgtaaactctcttttatcactgcttg |
200 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41035828 |
gaatagtgtacactgctatttgcacatctactctagctttacgtgggagcaaaagtggagctggagggtgtaagcgtaaactctcttttatcactgcttg |
41035729 |
T |
|
| Q |
201 |
caagtatggaagcctatcaatgtctgattcttcaattagtttgcatgatccaatggtttccctcagttcctttttggcttttaacatagtctcggaattg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
41035728 |
caagtatggaagcctatcaatgtctgattcttcaattagtttgcatgatccaatggtttccctcagttcctttttggcttttaacatagtctctggattg |
41035629 |
T |
|
| Q |
301 |
tgtattaattcacccattg |
319 |
Q |
| |
|
||||||||||||||||||| |
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| T |
41035628 |
tgtattaattcacccattg |
41035610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 41108334 - 41108074
Alignment:
| Q |
1 |
tcagatcctaaaaatctttctggtgaaaataaatcagcatcatcccatatgtttgttctaccaatagcccattcatttatctgaatttgtgcaccctttg |
100 |
Q |
| |
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||||| || |||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||| ||| ||| ||||||||| |||| |
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| T |
41108334 |
tcagaacccaaaaatctttctggtgaaaacaaatgagcatcatcccatatgtctgttctaccaatagcccattcattgatcagaacttgtgcaccttttg |
41108235 |
T |
|
| Q |
101 |
gaatagtgtacactgctatttccacatctaccctagctttacgtgggagcaaaagtggagctgaagggtgtaagcgtaaactctcttttatcactgcttg |
200 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||| ||||| | || || || | |||||||| ||||||||| ||||||||||||||||||||||| | |
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| T |
41108234 |
gaattgtgtaacctgctatttccacatctacccttgctttcctaggaagtaacattggagctggagggtgtaaacgtaaactctcttttatcactgcatt |
41108135 |
T |
|
| Q |
201 |
caagtatggaagcctatcaatgtctgattcttcaattagtttgcatgatccaatggtttcc |
261 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||| |||||| | |||||||||||||| |
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| T |
41108134 |
caagtatggaagcctatcaatatctgattcctcaattggtttgcctaatccaatggtttcc |
41108074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 41129458 - 41129198
Alignment:
| Q |
1 |
tcagatcctaaaaatctttctggtgaaaataaatcagcatcatcccatatgtttgttctaccaatagcccattcatttatctgaatttgtgcaccctttg |
100 |
Q |
| |
|
||||| || |||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||| ||| ||| ||||||||| |||| |
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|
| T |
41129458 |
tcagaacccaaaaatctttctggtgaaaacaaatgagcatcatcccatatgtctgttctaccaatagcccattcattgatcagaacttgtgcaccttttg |
41129359 |
T |
|
| Q |
101 |
gaatagtgtacactgctatttccacatctaccctagctttacgtgggagcaaaagtggagctgaagggtgtaagcgtaaactctcttttatcactgcttg |
200 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||| ||||| | || || || | |||||||| ||||||||| ||||||||||||||||||||||| | |
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| T |
41129358 |
gaattgtgtaacctgctatttccacatctacccttgctttcctaggaagtaacattggagctggagggtgtaaacgtaaactctcttttatcactgcatt |
41129259 |
T |
|
| Q |
201 |
caagtatggaagcctatcaatgtctgattcttcaattagtttgcatgatccaatggtttcc |
261 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||| |||||| | |||||||||||||| |
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|
| T |
41129258 |
caagtatggaagcctatcaatatctgattcctcaattggtttgcctaatccaatggtttcc |
41129198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 41143225 - 41143485
Alignment:
| Q |
1 |
tcagatcctaaaaatctttctggtgaaaataaatcagcatcatcccatatgtttgttctaccaatagcccattcatttatctgaatttgtgcaccctttg |
100 |
Q |
| |
|
||||| || |||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||| ||| ||| ||||||||| |||| |
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|
| T |
41143225 |
tcagaacccaaaaatctttctggtgaaaacaaatgagcatcatcccatatgtctgttctaccaatagcccattcattgatcagaacttgtgcaccttttg |
41143324 |
T |
|
| Q |
101 |
gaatagtgtacactgctatttccacatctaccctagctttacgtgggagcaaaagtggagctgaagggtgtaagcgtaaactctcttttatcactgcttg |
200 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||| ||||| | || || || | |||||||| ||||||||| ||||||||||||||||||||||| | |
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| T |
41143325 |
gaattgtgtaacctgctatttccacatctacccttgctttcctaggaagtaacattggagctggagggtgtaaacgtaaactctcttttatcactgcatt |
41143424 |
T |
|
| Q |
201 |
caagtatggaagcctatcaatgtctgattcttcaattagtttgcatgatccaatggtttcc |
261 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||| |||||| | |||||||||||||| |
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| T |
41143425 |
caagtatggaagcctatcaatatctgattcctcaattggtttgcctaatccaatggtttcc |
41143485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 41119083 - 41119343
Alignment:
| Q |
1 |
tcagatcctaaaaatctttctggtgaaaataaatcagcatcatcccatatgtttgttctaccaatagcccattcatttatctgaatttgtgcaccctttg |
100 |
Q |
| |
|
||||| || |||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||| ||| ||| ||||||||| |||| |
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| T |
41119083 |
tcagaacccaaaaatctttctggtgaaaacaaatgtgcatcatcccatatgtctgttctaccaatagcccattcattgatcagaacttgtgcaccttttg |
41119182 |
T |
|
| Q |
101 |
gaatagtgtacactgctatttccacatctaccctagctttacgtgggagcaaaagtggagctgaagggtgtaagcgtaaactctcttttatcactgcttg |
200 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||| ||||| | || || || | |||||||| ||||||||| ||||||||||||||||||||||| | |
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|
| T |
41119183 |
gaattgtgtaacctgctatttccacatctacccttgctttcctaggaagtaacattggagctggagggtgtaaacgtaaactctcttttatcactgcatt |
41119282 |
T |
|
| Q |
201 |
caagtatggaagcctatcaatgtctgattcttcaattagtttgcatgatccaatggtttcc |
261 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||| |||||| | |||||||||||||| |
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|
| T |
41119283 |
caagtatggaagcctatcaatatctgattcctcaattggtttgcctaatccaatggtttcc |
41119343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 237
Target Start/End: Original strand, 24467238 - 24467351
Alignment:
| Q |
124 |
acatctaccctagctttacgtgggagcaaaagtggagctgaagggtgtaagcgtaaactctcttttatcactgcttgcaagtatggaagcctatcaatgt |
223 |
Q |
| |
|
||||| ||||||||||| ||| || |||||||||||||| ||||| | |||||| | ||||||| ||||||||||| ||||| || ||| ||||| |
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|
| T |
24467238 |
acatcaaccctagctttttttggtagtaaaagtggagctgatgggtgcatgcgtaacgtttcttttactactgcttgcaaatatgggagtctagtaatgt |
24467337 |
T |
|
| Q |
224 |
ctgattcttcaatt |
237 |
Q |
| |
|
||||||| |||||| |
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|
| T |
24467338 |
ctgattcctcaatt |
24467351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 24484370 - 24484459
Alignment:
| Q |
148 |
agcaaaagtggagctgaagggtgtaagcgtaaactctcttttatcactgcttgcaagtatggaagcctatcaatgtctgattcttcaatt |
237 |
Q |
| |
|
||||||||||||||||| || || || ||||| | ||||||| | ||||| ||| |||||||| ||| ||||||||||||||||||| |
|
|
| T |
24484370 |
agcaaaagtggagctgatggatgcaaacgtaatgtttcttttactattgcttacaaatatggaagtctagtaatgtctgattcttcaatt |
24484459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 31135479 - 31135568
Alignment:
| Q |
148 |
agcaaaagtggagctgaagggtgtaagcgtaaactctcttttatcactgcttgcaagtatggaagcctatcaatgtctgattcttcaatt |
237 |
Q |
| |
|
||||||||||||||||| || || || ||||| | ||||||| ||||||||||| ||||| || ||| |||||||||||| |||||| |
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|
| T |
31135479 |
agcaaaagtggagctgatggatgcaaacgtaacgtttcttttactactgcttgcaaatatgggagtctagtaatgtctgattcatcaatt |
31135568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 237
Target Start/End: Complemental strand, 31153560 - 31153471
Alignment:
| Q |
148 |
agcaaaagtggagctgaagggtgtaagcgtaaactctcttttatcactgcttgcaagtatggaagcctatcaatgtctgattcttcaatt |
237 |
Q |
| |
|
||||||||||||||||| || || || ||||| | ||||||| ||||||||||| ||||| || ||| |||||||||||| |||||| |
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|
| T |
31153560 |
agcaaaagtggagctgatggatgcaaacgtaacgtttcttttactactgcttgcaaatatgggagtctagtaatgtctgattcatcaatt |
31153471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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