View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13993_low_29 (Length: 271)

Name: NF13993_low_29
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13993_low_29
NF13993_low_29
[»] chr2 (7 HSPs)
chr2 (15-253)||(27724477-27724715)
chr2 (15-240)||(27735719-27735950)
chr2 (170-219)||(7435557-7435606)
chr2 (170-219)||(7524386-7524435)
chr2 (165-225)||(27717303-27717364)
chr2 (163-219)||(16920702-16920758)
chr2 (139-225)||(27595668-27595754)
[»] chr8 (1 HSPs)
chr8 (15-221)||(14682135-14682341)
[»] chr1 (3 HSPs)
chr1 (165-222)||(19225744-19225801)
chr1 (165-237)||(19221209-19221281)
chr1 (178-219)||(344828-344869)
[»] chr5 (5 HSPs)
chr5 (161-220)||(37512600-37512659)
chr5 (163-220)||(32642642-32642699)
chr5 (164-213)||(42782935-42782984)
chr5 (164-213)||(41227659-41227708)
chr5 (164-220)||(42565277-42565333)
[»] chr4 (2 HSPs)
chr4 (178-220)||(4877550-4877592)
chr4 (154-219)||(48742276-48742341)
[»] chr7 (1 HSPs)
chr7 (164-219)||(42446026-42446081)
[»] chr6 (2 HSPs)
chr6 (164-219)||(32745195-32745250)
chr6 (162-219)||(32961060-32961117)
[»] scaffold0054 (1 HSPs)
scaffold0054 (163-219)||(33777-33833)


Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 27724477 - 27724715
Alignment:
Q  15 caaagggaaaaagagtggtaacgggcacctcagtggccaggttaaaagacaccacaaatgtttcacttggttgacgatatgtttttccccaccaatgaca 114  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27724477 caaagggaaaaagagtagtaacgggcacctcagtggccaggttaaaagacaccacaaatgtttcacttggttgacgatatgtttttccccaccaatggca 27724576  T
Q  115 aaccccatttaagtacaccatagaaccttccgaagtcaaataacgttgtggcatatcaacataaagtttcttccaagagttacttcttagactatatata 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27724577 aaccccatttaagtacaccatagaaccttccgaagtcaaataacgttgtggcatatcaacataaagttttttccaagagttacttcttagactatatata 27724676  T
Q  215 tcccaatagggaccgggcggtgcaacttgccactcatct 253  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27724677 tcccaatagggaccgggcggtgcaacttgccactcatct 27724715  T

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Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 27735719 - 27735950
Alignment:
Q  15 caaagggaaaaagagtggtaacgggcacctcagtggccaggttaaaagacaccacaaatgtttcacttggttgac------gatatgtttttccccacca 108  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||   |      ||||||| |||||||||||    
T  27735719 caaagggaaagagagtggtaacaggcacctcattggccaggttaaaagacaccacaaatgtttcacttggtattcccattagatatgtgtttccccacca 27735818  T
Q  109 atgacaaaccccatttaagtacaccatagaaccttccgaagtcaaataacgttgtggcatatcaacataaagtttcttccaagagttacttcttagacta 208  Q
    ||| |||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||  ||||||   |||||||    
T  27735819 atggcaaaccccatttaaatacaccatagaaccttccgaagtcaaataacgttgccgcatatcaacataaagtttcttccaacggttactctgtagacta 27735918  T
Q  209 tatatatcccaatagggaccgggcggtgcaac 240  Q
    ||||| ||||||||||| ||||| ||||||||    
T  27735919 tatatttcccaataggggccgggtggtgcaac 27735950  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 7435557 - 7435606
Alignment:
Q  170 tcaacataaagtttcttccaagagttacttcttagactatatatatccca 219  Q
    ||||||| |||||||||||||||||| ||||||||||||||||| |||||    
T  7435557 tcaacatcaagtttcttccaagagttgcttcttagactatatatctccca 7435606  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 7524386 - 7524435
Alignment:
Q  170 tcaacataaagtttcttccaagagttacttcttagactatatatatccca 219  Q
    ||||||| |||||||||||||||||| |||||||| |||||||| |||||    
T  7524386 tcaacatcaagtttcttccaagagttgcttcttaggctatatatttccca 7524435  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 27717303 - 27717364
Alignment:
Q  165 gcatatcaacataaagtttcttccaag-agttacttcttagactatatatatcccaataggg 225  Q
    ||||||||||||||||||||||||||| | ||  || ||||||||||||||| |||||||||    
T  27717303 gcatatcaacataaagtttcttccaagaattttttttttagactatatatataccaataggg 27717364  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 16920758 - 16920702
Alignment:
Q  163 tggcatatcaacataaagtttcttccaagagttacttcttagactatatatatccca 219  Q
    |||||| |||| || ||||||| ||||||| |||||||||||||||||||| |||||    
T  16920758 tggcatttcaatatcaagtttcctccaagaattacttcttagactatatatctccca 16920702  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 27595668 - 27595754
Alignment:
Q  139 accttccgaagtcaaataacgttgtggcatatcaacataaagtttcttccaagagttacttcttagactatatatatcccaataggg 225  Q
    |||| ||||| || || |||| ||| ||||||||||||||||| ||| |||| |||||||   || ||||||||| |||||||||||    
T  27595668 acctaccgaactccaaaaacgatgtcgcatatcaacataaagtgtctcccaaaagttactctctaaactatatatttcccaataggg 27595754  T

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Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 14682135 - 14682341
Alignment:
Q  15 caaagggaaaaagagtggtaacgggcacctcagtggccaggttaaaagacaccacaaatgtttcacttggttgacgatatgtttttccccaccaatgaca 114  Q
    |||||||||| ||||||||||| || |||||| ||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||    
T  14682135 caaagggaaagagagtggtaacaggaacctcattggccaggtcaaaagacaccacaaatgtttcaattggttgacgatatatttttccccaccaatggca 14682234  T
Q  115 aaccccatttaagtacaccatagaaccttccgaagtcaaataacgttgtggcatatcaacataaagtttcttccaagagttacttcttagactatatata 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||  |||||||| ||||||||||||     
T  14682235 aaccccatttaagtacaccatagaaccttccgaagtcaaataacgttgtcgcatatcaacgtaaagtttcttccaatggttacttcgtagactatatatg 14682334  T
Q  215 tcccaat 221  Q
    |||||||    
T  14682335 tcccaat 14682341  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 19225744 - 19225801
Alignment:
Q  165 gcatatcaacataaagtttcttccaagagttacttcttagactatatatatcccaata 222  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  19225744 gcatatcaacataaagttttttccaagagttactttttagactatatatgtcccaata 19225801  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 19221281 - 19221209
Alignment:
Q  165 gcatatcaacataaagtttcttccaagagttacttcttagactatatatatcccaatagggaccgggcggtgc 237  Q
    |||||||||||| |||||| |||||||||||||  |||||||||||||| |||||||| || |||||||||||    
T  19221281 gcatatcaacatgaagttttttccaagagttacgccttagactatatatgtcccaataagggccgggcggtgc 19221209  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 344869 - 344828
Alignment:
Q  178 aagtttcttccaagagttacttcttagactatatatatccca 219  Q
    |||||||||||||||||||||| ||||||| ||||| |||||    
T  344869 aagtttcttccaagagttactttttagactgtatatctccca 344828  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 37512659 - 37512600
Alignment:
Q  161 tgtggcatatcaacataaagtttcttccaagagttacttcttagactatatatatcccaa 220  Q
    |||||||||| ||||| ||||||  |||||||||| |||||||| |||||||||||||||    
T  37512659 tgtggcatattaacatcaagttttctccaagagttgcttcttaggctatatatatcccaa 37512600  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 32642699 - 32642642
Alignment:
Q  163 tggcatatcaacataaagtttcttccaagagttacttcttagactatatatatcccaa 220  Q
    ||||||| |||||| ||||||  |||||||||||||||||| ||||||||| ||||||    
T  32642699 tggcataacaacatcaagttttctccaagagttacttcttaaactatatatctcccaa 32642642  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 42782984 - 42782935
Alignment:
Q  164 ggcatatcaacataaagtttcttccaagagttacttcttagactatatat 213  Q
    |||||| |||||| ||||||| |||||||||||||||||||||| |||||    
T  42782984 ggcataacaacatcaagtttcctccaagagttacttcttagactgtatat 42782935  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 41227708 - 41227659
Alignment:
Q  164 ggcatatcaacataaagtttcttccaagagttacttcttagactatatat 213  Q
    |||||| |||||| ||||||| |||||| ||||||||||||||| |||||    
T  41227708 ggcataacaacatcaagtttcctccaagggttacttcttagactgtatat 41227659  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 42565277 - 42565333
Alignment:
Q  164 ggcatatcaacataaagtttcttccaagagttacttcttagactatatatatcccaa 220  Q
    ||||||||| ||| |||||| ||||||||||| |||||||| ||||| || ||||||    
T  42565277 ggcatatcagcatcaagtttattccaagagttgcttcttaggctataaatctcccaa 42565333  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 4877592 - 4877550
Alignment:
Q  178 aagtttcttccaagagttacttcttagactatatatatcccaa 220  Q
    ||||||||||||||||||||||||||||||||| || ||||||    
T  4877592 aagtttcttccaagagttacttcttagactataaatctcccaa 4877550  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 48742276 - 48742341
Alignment:
Q  154 ataacgttgtggcatatcaacataaagtttcttccaagagttacttcttagactatatatatccca 219  Q
    ||||| ||| |||||||| | || || |||| |||||||||||||||||||||| ||||| |||||    
T  48742276 ataacattgaggcatatccagatcaattttcctccaagagttacttcttagactgtatatctccca 48742341  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 42446081 - 42446026
Alignment:
Q  164 ggcatatcaacataaagtttcttccaagagttacttcttagactatatatatccca 219  Q
    ||||| ||||||| ||||||| |||| | ||||||||||||||||||||| |||||    
T  42446081 ggcatgtcaacatcaagtttcctccacgggttacttcttagactatatatctccca 42446026  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 32745195 - 32745250
Alignment:
Q  164 ggcatatcaacataaagtttcttccaagagttacttcttagactatatatatccca 219  Q
    ||||| ||||||| ||||||| |||| |||||||||||||| |||||||| |||||    
T  32745195 ggcatgtcaacatcaagtttcctccaggagttacttcttaggctatatatctccca 32745250  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 32961060 - 32961117
Alignment:
Q  162 gtggcatatcaacataaagtttcttccaagagttacttcttagactatatatatccca 219  Q
    ||||||| ||||||| ||||||| |||| |||||||||||||  |||||||| |||||    
T  32961060 gtggcatgtcaacatcaagtttcctccacgagttacttcttacgctatatatctccca 32961117  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 33777 - 33833
Alignment:
Q  163 tggcatatcaacataaagtttcttccaagagttacttcttagactatatatatccca 219  Q
    |||||| |||| || ||||||| |||| |||||||||||||| |||||||| |||||    
T  33777 tggcatgtcaatatcaagtttcctccacgagttacttcttaggctatatatctccca 33833  T

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