View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13993_low_3 (Length: 664)
Name: NF13993_low_3
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 615; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 10 - 648
Target Start/End: Complemental strand, 38691536 - 38690898
Alignment:
| Q |
10 |
ataatacttgtcattgaatattagatggtacaattttaacattaaattgacccttcatgttacacttaacaggtttgggggttaaagacaaagcaagtca |
109 |
Q |
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| T |
38691536 |
ataatacttgtcattgaatattagatggtacaattttaacattaaattgacccttcatgttacacttaacaggtttaggggttaaagacaaagcaagtca |
38691437 |
T |
|
| Q |
110 |
tatgttgtctttaaatgggattgatatatacaataagatctcatggatgcaaatgttgttaatatactaaccgaaaaattgatagcaacaaaattgtgga |
209 |
Q |
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| T |
38691436 |
tatgttgtctttaaatgggattgatatatacaataagatctcatgtatgcaaatgttgttaatatactaaccgaaaaattgatagcaacaaaattgtgga |
38691337 |
T |
|
| Q |
210 |
aattctcttctgtttatttattcattgaaacagtacaaagagtgcaatttacactgaaattgttatgaggaatcactatgaaaagtactgaagataaagg |
309 |
Q |
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| T |
38691336 |
aattcgcttctgtttatttattcattgaaacagtacaaagagtgcaatttacactgatattgttatgaggaatcactatgaaaagtactgaagataaagg |
38691237 |
T |
|
| Q |
310 |
taaggaaacagaaaagaaatttgttgttgtaaacttagaatattcccttggcttttatctccatttattacataaacaatactggtaatattaatagttg |
409 |
Q |
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| T |
38691236 |
taaggaaacagaaaagaaatttgttgttgtaaacttgtaatattcccttggcttttatctccatttattacataaacaatactggtaatattaatagttg |
38691137 |
T |
|
| Q |
410 |
agaatctgcagttgaaaaattaacatataagatatagataatgatggagtatcaagtaattggttcacttaactttaaatttgaaagaattgaagcaaat |
509 |
Q |
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| T |
38691136 |
agaatctgcagttgaaaaattaacatataagatatagataatgatggagtatcaagtaattggttcacttaactttaaatttgaaagaattgaagcaaat |
38691037 |
T |
|
| Q |
510 |
ttgggtaattctaattctctacctatagtctttgattgtataattggtttttataagttaacatagattcatagctatggactatatgtacacgtaaaaa |
609 |
Q |
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| T |
38691036 |
ttgggtaattctaattctctacctatagtctttgattgtataattggtttttataagttaacatagattcatagctatggactatatgtacacgtaaaaa |
38690937 |
T |
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| Q |
610 |
ggataaatcatgtgatctacatatggaaatataaaatat |
648 |
Q |
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| T |
38690936 |
ggataaatcatgtgatctacatatggaaatataaaatat |
38690898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 546 - 623
Target Start/End: Complemental strand, 38634235 - 38634158
Alignment:
| Q |
546 |
tgtataattggtttttataagttaacatagattcatagctatggactatatgtacacgtaaaaaggataaatcatgtg |
623 |
Q |
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||||||||||| ||| |||| |||||||||| ||||||||||||||||| |||||| ||||||||||||||| ||||| |
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| T |
38634235 |
tgtataattggatttcataaattaacatagactcatagctatggactatttgtacatgtaaaaaggataaatgatgtg |
38634158 |
T |
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