View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13993_low_31 (Length: 265)
Name: NF13993_low_31
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 32877466 - 32877710
Alignment:
| Q |
9 |
gagatgaaaatttcgccaactaagaaaatgcaactgtgcatatgtgcaaagaaactagtgcagtaatgtaggaaaccg----ttcttgggtgaagcggaa |
104 |
Q |
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| T |
32877466 |
gagatgaaaatttcgacaactaagaaaatgcaattgtgcatatgtgcaaacaaactagtgcagtaatgcaagaaatcgaccattcttgggtgaagcggaa |
32877565 |
T |
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| Q |
105 |
tgccacgaacaaaaagaaaagaaagggccttgtaacggctggggttgttaacatcggtaacattcaagattcaacaatacaattacaaataattggttgc |
204 |
Q |
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| T |
32877566 |
tgccacgaacaaaaataaaagaaagggccttgtaacggctggggatgttaacatcggtaacattcaacattcgacaatacaagtacaaatgattggttgc |
32877665 |
T |
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| Q |
205 |
aagagagttcattccggaacccgtaaacatagtgaacatacatat |
249 |
Q |
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| T |
32877666 |
aagagagttcattccggaacccgtaaacatagtaaacatacatat |
32877710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 215
Target Start/End: Complemental strand, 32880179 - 32879993
Alignment:
| Q |
31 |
agaaaatgcaactgtgcatatgtgcaaagaaactagtgcagtaatgtaggaa----accgttcttgggtgaagcggaatgccacgaacaaaaagaaaaga |
126 |
Q |
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| T |
32880179 |
agaaaatgcaactctgaatatgtgcaaagacatttgtgcagtaatgcagtaaatcgatcgttctagggtgaagcggaatgctaggaacaaaaataaaaga |
32880080 |
T |
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| Q |
127 |
aagggccttgtaacggctggggttgttaacatcggtaacattcaagattcaacaatacaattacaaataattggttgcaagagagttca |
215 |
Q |
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| T |
32880079 |
aagggccttgcaacggc-ggggatggaaacatcagtaa-attcaagattcaacaatacagttacaaatgattggttgcaagagagttca |
32879993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 211
Target Start/End: Complemental strand, 26750871 - 26750757
Alignment:
| Q |
97 |
aagcggaatgccacgaacaaaaagaaaagaaagggccttgtaacggctggggttgttaacatcggtaacattcaagattcaacaatacaattacaaataa |
196 |
Q |
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|||| |||||||| |||| |||| |||||||||||||| | ||| |||| || || |||||| |||||| ||||| |||||||||| | |||||||| |
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| T |
26750871 |
aagcagaatgccaggaacgaaaacaaaagaaagggcctcgcaactgctgaggatggaaacatcagtaacagtcaagtttcaacaataaagttacaaatgg |
26750772 |
T |
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| Q |
197 |
ttggttgcaagagag |
211 |
Q |
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| T |
26750771 |
ttggttgcgagagag |
26750757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 31760385 - 31760312
Alignment:
| Q |
161 |
gtaacattcaagattcaacaatacaattacaaataattggttgcaagagagttcattccggaacccgtaaacat |
234 |
Q |
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| T |
31760385 |
gtaacgttcaagattcaacaatagagttacaaatgattagttgcaggagagttcattctggaaccagtgaacat |
31760312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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