View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13993_low_32 (Length: 254)
Name: NF13993_low_32
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 40735645 - 40735578
Alignment:
| Q |
1 |
ttggtagatagcgtggcgggatttgattggcgcggtgatgtccacacacaaaaaatggaaaaaggagct |
69 |
Q |
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| T |
40735645 |
ttggtagatagcgtggcgggatttgattggcgcggtgatgtccacaca-aaaaaatggaaaaaggagct |
40735578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 245
Target Start/End: Complemental strand, 40735271 - 40735233
Alignment:
| Q |
207 |
atatgcacaaaaatggaaaaatgaactatgatgatgatg |
245 |
Q |
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| T |
40735271 |
atatgcacaaaaatggaaaaatgaactatgatgatgatg |
40735233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 40735330 - 40735293
Alignment:
| Q |
183 |
gaatgattaataggaagaagttaaatatgcacaaaaat |
220 |
Q |
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| T |
40735330 |
gaatgattaataggaagaagttaaatatgcacaaaaat |
40735293 |
T |
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