View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13993_low_33 (Length: 250)
Name: NF13993_low_33
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 32750486 - 32750267
Alignment:
| Q |
20 |
atgtgctatataatacaaagcccatcctcacaaaaccatgggtgcaagcacatttaaaatctta---ctatgnnnnnnnnnaggcaaagctcgttactta |
116 |
Q |
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| T |
32750486 |
atgtgctatataatacaaagcccatcctcacaaaaccatgggtgcaagcacatttaaaatcttatgttttttttttattttaggcaaagctcgttactta |
32750387 |
T |
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| Q |
117 |
caaacccattaatttgtttttgacaaattaaaaccactactcagaatac-nnnnnnnaatagaaaataaattcataacaatcaaaatatttctacattca |
215 |
Q |
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| T |
32750386 |
caaacccattaatttgtttttgac--attaaaaccactactcagaatactttttttttatagaaaataaattcataacaatcaaaatatttctacat--- |
32750292 |
T |
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| Q |
216 |
catgctgcagagtctttcatctcactc |
242 |
Q |
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|||||||||||||||||| |||||| |
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| T |
32750291 |
--tgctgcagagtctttcatttcactc |
32750267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 242
Target Start/End: Complemental strand, 32756525 - 32756383
Alignment:
| Q |
98 |
aggcaaagctcgttacttacaaacccattaatttgtttttgacaaattaaaaccactactcagaatacnnnnnnnaatagaaaataaattcataacaatc |
197 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |||| | ||||||||||| | |||||| |||||||||||| ||| ||||||| |
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| T |
32756525 |
aggcaaagctcgttacttacaaaccaattaatttgttttggacagactaaaaccactaattagaatattttttt--atagaaaataaaatcaaaacaatc |
32756428 |
T |
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| Q |
198 |
aaaatatttctacattcacatgctgcagagtctttcatctcactc |
242 |
Q |
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| T |
32756427 |
aaaatatttcttcattcacatgctgcagagtatttcatttcactc |
32756383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 32752806 - 32752745
Alignment:
| Q |
174 |
atagaaaataaattcataacaatcaaaatatttctacattcacatgctgcagagtctttcat |
235 |
Q |
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|||||||||||| ||| |||||||||||||||||| |||||||||||||||| || |||||| |
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| T |
32752806 |
atagaaaataaaatcaaaacaatcaaaatatttcttcattcacatgctgcagggtatttcat |
32752745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 32756590 - 32756540
Alignment:
| Q |
32 |
atacaaagcccatcctcacaaaaccatgggtgcaagcacatttaaaatctt |
82 |
Q |
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|||||||| || ||||||| |||||| ||||||||||||||||||||||| |
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| T |
32756590 |
atacaaagaccgtcctcactaaaccaccggtgcaagcacatttaaaatctt |
32756540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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