View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13993_low_35 (Length: 247)
Name: NF13993_low_35
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 36811812 - 36811992
Alignment:
| Q |
16 |
ctataacaacaatgatacgtgtatcatttcagggtcgttctttggtctttgaacaaatctatggattgttctgtcggcattcaactcgaaggcggtgcat |
115 |
Q |
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| T |
36811812 |
ctataacaacaatgatgtatgtatcatttcagtgtcgttctttggtctttgaacaaatctatggatggttttgtcggcattcaacccaaaggcggtacat |
36811911 |
T |
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| Q |
116 |
tgtgagtttccatctaacttgtttgtgagccattgttaaaaagtgcagttgtacatgttttatattgattggtcacataga |
196 |
Q |
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| T |
36811912 |
tgtgagtttccatctaacatgtttgtgagtcattgttaaaaagtgcatttgtaaatgttttatattgattggtcacataga |
36811992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 33396188 - 33396099
Alignment:
| Q |
68 |
acaaatctatggattgttctgtcggcattcaactcgaaggcgg-tgcattgtgagtttccatctaacttgtttgtgagccattgttaaaa |
156 |
Q |
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| T |
33396188 |
acaaatctatggatggttctgttggcattcaatctggagccggttgcattgtgagtttccagctgacttgtttgtgagctattgttaaaa |
33396099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 33396057 - 33395985
Alignment:
| Q |
155 |
aaagtgcagttgtacatgttttatattgattggtcacatagagataaatcttaattcaatagcatttgaaact |
227 |
Q |
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| T |
33396057 |
aaagtacatttgtacatgttttataccgactggtcacatagagataaatcataattcaatagtgtttgaaact |
33395985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 36874847 - 36874749
Alignment:
| Q |
51 |
cgttctttggtctttgaacaaatctatggattgttctgtcggcattcaactcgaaggcgg-tgcattgtgagtttccatctaacttgtttgtgagccat |
148 |
Q |
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| T |
36874847 |
cgttgtttggtctcagaacaaatccatagatggttcagtcggcattcaacctggagccgggtgcattgtaagtttccatcagacttgtttgtgagccat |
36874749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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