View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13993_low_39 (Length: 236)

Name: NF13993_low_39
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13993_low_39
NF13993_low_39
[»] chr7 (22 HSPs)
chr7 (15-236)||(30405463-30405685)
chr7 (70-234)||(4828713-4828879)
chr7 (80-201)||(37144852-37144974)
chr7 (109-226)||(7361669-7361786)
chr7 (111-222)||(7372606-7372713)
chr7 (80-226)||(9755732-9755879)
chr7 (80-218)||(8606002-8606140)
chr7 (129-220)||(17881540-17881631)
chr7 (80-226)||(9800529-9800675)
chr7 (77-226)||(29544448-29544598)
chr7 (158-226)||(5312821-5312889)
chr7 (137-226)||(20470846-20470935)
chr7 (151-222)||(2351001-2351072)
chr7 (126-196)||(16536640-16536710)
chr7 (126-196)||(16628952-16629022)
chr7 (85-142)||(21543071-21543129)
chr7 (158-234)||(3268992-3269069)
chr7 (158-234)||(18496576-18496653)
chr7 (129-222)||(22067846-22067939)
chr7 (134-223)||(23124887-23124976)
chr7 (126-190)||(16577344-16577408)
chr7 (126-190)||(16588254-16588318)
[»] chr2 (20 HSPs)
chr2 (80-226)||(29647581-29647728)
chr2 (80-226)||(27918019-27918165)
chr2 (126-219)||(22388796-22388888)
chr2 (129-227)||(18116965-18117063)
chr2 (135-220)||(17415237-17415322)
chr2 (80-234)||(19540969-19541125)
chr2 (94-201)||(21505200-21505308)
chr2 (92-234)||(24047326-24047470)
chr2 (126-220)||(32276555-32276649)
chr2 (94-226)||(28278459-28278591)
chr2 (126-222)||(35707782-35707878)
chr2 (111-166)||(22510911-22510966)
chr2 (129-222)||(21849113-21849206)
chr2 (134-176)||(22525738-22525780)
chr2 (159-201)||(35031714-35031756)
chr2 (158-234)||(21843029-21843106)
chr2 (158-234)||(21844656-21844733)
chr2 (134-222)||(1733087-1733175)
chr2 (158-226)||(17152164-17152232)
chr2 (126-222)||(30998750-30998846)
[»] chr5 (17 HSPs)
chr5 (80-226)||(23157824-23157974)
chr5 (129-222)||(20694622-20694715)
chr5 (94-234)||(7742896-7743039)
chr5 (80-202)||(22643924-22644047)
chr5 (134-220)||(19331498-19331584)
chr5 (126-234)||(20083445-20083553)
chr5 (128-201)||(24517335-24517408)
chr5 (83-163)||(25367555-25367636)
chr5 (160-234)||(24410956-24411031)
chr5 (133-234)||(18222479-18222581)
chr5 (94-222)||(12340054-12340181)
chr5 (129-201)||(17382096-17382168)
chr5 (82-222)||(26070409-26070549)
chr5 (126-186)||(30072157-30072217)
chr5 (129-208)||(15697390-15697469)
chr5 (88-163)||(16603710-16603785)
chr5 (158-220)||(4325399-4325461)
[»] chr8 (16 HSPs)
chr8 (111-222)||(24584764-24584875)
chr8 (133-234)||(13583536-13583638)
chr8 (79-234)||(30543694-30543849)
chr8 (80-234)||(30851126-30851282)
chr8 (80-222)||(10866920-10867063)
chr8 (126-234)||(14977133-14977243)
chr8 (126-222)||(11437398-11437494)
chr8 (98-234)||(12956439-12956577)
chr8 (156-226)||(32239296-32239366)
chr8 (134-234)||(14424839-14424940)
chr8 (134-219)||(29291758-29291842)
chr8 (126-234)||(35135449-35135558)
chr8 (159-226)||(28902101-28902168)
chr8 (129-234)||(6888217-6888322)
chr8 (108-201)||(13530166-13530259)
chr8 (108-201)||(13619705-13619798)
[»] chr3 (13 HSPs)
chr3 (80-226)||(28422385-28422532)
chr3 (111-232)||(19546012-19546129)
chr3 (80-234)||(21829159-21829315)
chr3 (144-234)||(26297746-26297837)
chr3 (128-222)||(8402590-8402684)
chr3 (129-207)||(26387899-26387977)
chr3 (126-226)||(13911244-13911344)
chr3 (135-234)||(18474159-18474258)
chr3 (167-234)||(33577754-33577822)
chr3 (126-230)||(33914594-33914698)
chr3 (172-234)||(11474871-11474934)
chr3 (80-234)||(25919489-25919647)
chr3 (129-201)||(30493325-30493396)
[»] scaffold0065 (1 HSPs)
scaffold0065 (80-201)||(12034-12156)
[»] scaffold0337 (1 HSPs)
scaffold0337 (86-201)||(1604-1720)
[»] chr6 (12 HSPs)
chr6 (86-201)||(24507645-24507761)
chr6 (134-222)||(17198795-17198880)
chr6 (129-226)||(26512813-26512910)
chr6 (129-226)||(26517929-26518026)
chr6 (78-222)||(20495834-20495978)
chr6 (135-223)||(14768307-14768395)
chr6 (129-200)||(32930534-32930605)
chr6 (129-222)||(13759491-13759584)
chr6 (137-226)||(13835591-13835680)
chr6 (158-223)||(16387287-16387352)
chr6 (173-225)||(1755598-1755650)
chr6 (178-226)||(13830870-13830918)
[»] scaffold0043 (1 HSPs)
scaffold0043 (134-219)||(58732-58817)
[»] scaffold1149 (1 HSPs)
scaffold1149 (85-229)||(1723-1867)
[»] chr4 (11 HSPs)
chr4 (111-234)||(19601762-19601886)
chr4 (126-222)||(21077212-21077308)
chr4 (80-226)||(22119578-22119725)
chr4 (80-226)||(10576385-10576532)
chr4 (126-192)||(29437448-29437514)
chr4 (129-222)||(23353605-23353698)
chr4 (129-226)||(24925787-24925884)
chr4 (134-222)||(9783023-9783111)
chr4 (159-222)||(27302790-27302853)
chr4 (126-234)||(34864320-34864427)
chr4 (134-195)||(17339880-17339941)
[»] chr1 (14 HSPs)
chr1 (79-228)||(52271278-52271427)
chr1 (126-220)||(15298911-15299005)
chr1 (129-234)||(25126462-25126568)
chr1 (80-201)||(21550940-21551060)
chr1 (108-226)||(18795142-18795260)
chr1 (118-234)||(21548619-21548736)
chr1 (129-225)||(34381690-34381786)
chr1 (80-234)||(50047113-50047269)
chr1 (126-234)||(19257830-19257939)
chr1 (134-226)||(30675471-30675563)
chr1 (155-222)||(26854357-26854424)
chr1 (94-222)||(12423954-12424083)
chr1 (126-234)||(26102036-26102145)
chr1 (126-234)||(31313531-31313640)
[»] scaffold0190 (1 HSPs)
scaffold0190 (80-222)||(11737-11880)
[»] scaffold0185 (1 HSPs)
scaffold0185 (158-226)||(1454-1522)


Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 30405463 - 30405685
Alignment:
Q  15 aaaacaagctaggtgtggtggggtaatttagtcagtattggagtattggatgtggtgttggtacatgatgatggaataacatatgatatttt-tgctatg 113  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30405463 aaaacaagctaggtgtggtggggtaatttagtcggtattggagtattggatgtggtgttggtacatgatgatggaataacatatgatattttttgctatg 30405562  T
Q  114 tttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcat 213  Q
    ||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30405563 tttctagtgtaattctttgcatttgaaggtaaattagaagtcaattagaggagttgttaatggtttgaggaactttttgtattgtttttatttgactcat 30405662  T
Q  214 tgtaattcactttatcctaaacc 236  Q
    |||||||||||||||||||||||    
T  30405663 tgtaattcactttatcctaaacc 30405685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 70 - 234
Target Start/End: Original strand, 4828713 - 4828879
Alignment:
Q  70 tgttggtacatgatgatggaataacatatgatattttt-gctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagtt 168  Q
    ||||||| | |||||||||||||||||||||||||||| ||| | ||| |||||||||| |||| ||||||||| |||||  ||| | ||| ||||||||    
T  4828713 tgttggtgcttgatgatggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagtt 4828812  T
Q  169 gttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcac-tttatcctaaa 234  Q
     | ||||| ||||||||||||||||||| |||||| | || ||||||||||| || |||||||||||    
T  4828813 ttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaa 4828879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 37144852 - 37144974
Alignment:
Q  80 tgatgatggaataacatatgatatttttg-ctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggat 178  Q
    |||||||||||||||||||||| | |||  |||||||| |||| |||||||||| ||||||||||||||| |||| |||||||||||||||| | ||  |    
T  37144852 tgatgatggaataacatatgatgtatttaactatgtttttagtataattctttggatttgaaggcaaatttgaagtcaattagaggagttgtcattgttt 37144951  T
Q  179 tgaggaactttttgtattgtttt 201  Q
    |||  ||||||||||||| ||||    
T  37144952 tgaaaaactttttgtattatttt 37144974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 226
Target Start/End: Complemental strand, 7361786 - 7361669
Alignment:
Q  109 ctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttga 208  Q
    |||||||||||||||||||||||| |||| ||||||||||| ||  | |||||||||||||| | ||| | || |||||||||||| |||||| ||| ||    
T  7361786 ctatgtttctagtgtaattctttgcattttaaggcaaattaaaaatctattagaggagttgtcattggttcgatgaactttttgtaatgttttcattcga 7361687  T
Q  209 ctcattgtaattcacttt 226  Q
     ||||||||| |||||||    
T  7361686 gtcattgtaactcacttt 7361669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 222
Target Start/End: Complemental strand, 7372713 - 7372606
Alignment:
Q  111 atgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgact 210  Q
    |||||| ||||||||||||||| ||||||||| |||||||||    |||||||||||||| | ||| |||| ||||||||||||||||||| ||| || |    
T  7372713 atgtttttagtgtaattctttgcatttgaaggtaaattagaa----attagaggagttgtcattggtttgatgaactttttgtattgttttcattcgagt 7372618  T
Q  211 cattgtaattca 222  Q
    | ||||||||||    
T  7372617 cgttgtaattca 7372606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 226
Target Start/End: Original strand, 9755732 - 9755879
Alignment:
Q  80 tgatgatggaataacatatgatattttt-gctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggat 178  Q
    |||||||| ||||||||||||||||| | ||||||||| |||| || ||  ||| |||||||||||||||| ||| ||||||||||| |||| | | | |    
T  9755732 tgatgatgaaataacatatgatatttgtagctatgtttttagtatattttcttgcatttgaaggcaaattataagtcaattagaggaattgtcactagtt 9755831  T
Q  179 tgaggaactttttgtattgtttttatttgactcattgtaattcacttt 226  Q
    |||||||| ||||||||| |||| | | || || |||||||| |||||    
T  9755832 tgaggaacgttttgtatttttttcactcgagtcgttgtaatttacttt 9755879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 218
Target Start/End: Original strand, 8606002 - 8606140
Alignment:
Q  80 tgatgatggaataacatatgatatttttgctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggatt 179  Q
    |||||||||||||||||||||| |||| ||||||||| ||||    || ||||  ||| |||| |||||||||  |||||||||||||| | ||||| ||    
T  8606002 tgatgatggaataacatatgatgttttagctatgtttttagttattttatttgcgtttaaaggaaaattagaaatcaattagaggagttttcaatggttt 8606101  T
Q  180 gaggaactttttgtattgtttttatttgactcattgtaa 218  Q
    ||||||||||| | |||||||| ||| || || ||||||    
T  8606102 gaggaacttttggcattgttttcattcgagtcgttgtaa 8606140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 220
Target Start/End: Complemental strand, 17881631 - 17881540
Alignment:
Q  129 tttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaatt 220  Q
    |||| |||||||||||||||||||| || ||| ||||||||| ||||  || |||||||||||||||| |||| ||| || |||||||||||    
T  17881631 tttgcatttgaaggcaaattagaagtcatttaaaggagttgtcaatgattttaggaactttttgtattattttcattcgaatcattgtaatt 17881540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 226
Target Start/End: Original strand, 9800529 - 9800675
Alignment:
Q  80 tgatgatggaataacatatgatatttttgctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggatt 179  Q
    |||||||||||||||||||||||||| |   |||||| |||| || ||  ||| ||||||||| |||||| ||| ||||||||||| |||| | | | ||    
T  9800529 tgatgatggaataacatatgatatttgtagcatgtttttagtatattttcttgcatttgaaggaaaattataagtcaattagaggaattgtcactagttt 9800628  T
Q  180 gaggaactttttgtattgtttttatttgactcattgtaattcacttt 226  Q
    ||||||| ||||||||| |||| | | || || |||||||| |||||    
T  9800629 gaggaacgttttgtatttttttcactcgagtcgttgtaatttacttt 9800675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 29544448 - 29544598
Alignment:
Q  77 acatgatgatggaataacatatgatatttttg-ctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatg 175  Q
    ||||||||| |||  | ||||||||||||||| |||||||| || |    ||||||| |||||||| ||||| ||| || | ||||||||||||| |||     
T  29544448 acatgatgaaggagcatcatatgatatttttggctatgtttttattaattttctttgcatttgaagacaaataagatgagagttagaggagttgtcaata 29544547  T
Q  176 gattgaggaactttttgtattgtttttatttgactcattgtaattcacttt 226  Q
    | ||||||||| | |||||||||||| | | || || ||||||||||||||    
T  29544548 gtttgaggaacatattgtattgttttcactcgagtcgttgtaattcacttt 29544598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 5312889 - 5312821
Alignment:
Q  158 ttagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcacttt 226  Q
    |||||| ||||||||||||  | ||||||| ||||||||||||| |||||| || ||||||||||||||    
T  5312889 ttagagaagttgttaatggtctaaggaactatttgtattgttttcatttgagtcgttgtaattcacttt 5312821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 20470935 - 20470846
Alignment:
Q  137 tgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcacttt 226  Q
    ||||| ||||| ||| || ||||||||||||||| ||||| ||||||||| | || ||||||||| | || | || ||||||||||||||    
T  20470935 tgaagacaaataagatgataattagaggagttgtcaatggtttgaggaacatattatattgttttcacttaagtcgttgtaattcacttt 20470846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 2351001 - 2351072
Alignment:
Q  151 aagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattca 222  Q
    |||| |||||||||||||||| |||| ||||| ||| |||||||||||||| |||  | | |||||||||||    
T  2351001 aagataattagaggagttgttcatggtttgagaaacattttgtattgttttcattccagttattgtaattca 2351072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 16536710 - 16536640
Alignment:
Q  126 ttctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtatt 196  Q
    ||||||| |||||||| ||||||||||| || ||||||||||| ||||||  ||||  ||| |||||||||    
T  16536710 ttctttgcatttgaagacaaattagaagtcatttagaggagtttttaatgacttgattaaccttttgtatt 16536640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 16628952 - 16629022
Alignment:
Q  126 ttctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtatt 196  Q
    ||||||| |||||||| ||||||||||| || ||||||||||| ||||||  ||||  ||| |||||||||    
T  16628952 ttctttgcatttgaagacaaattagaagtcatttagaggagtttttaatgacttgattaaccttttgtatt 16629022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 21543129 - 21543071
Alignment:
Q  85 atggaataacatatgatattttt-gctatgtttctagtgtaattctttgtatttgaagg 142  Q
    ||||||||||||||||| ||||| ||||||||| |||||||||| |||  |||||||||    
T  21543129 atggaataacatatgatgtttttagctatgtttttagtgtaattattttcatttgaagg 21543071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 3269069 - 3268992
Alignment:
Q  158 ttagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcac-tttatcctaaa 234  Q
    ||||||||||||| | ||| ||||| ||| ||||||||||||||  ||||| |  ||||||||||| |||||||||||    
T  3269069 ttagaggagttgtcattggtttgagtaacattttgtattgttttcgtttgagttgttgtaattcacttttatcctaaa 3268992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 18496576 - 18496653
Alignment:
Q  158 ttagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattca-ctttatcctaaa 234  Q
    |||||| |||||| ||| | |||||||||| |||| |||||||| ||| || |||||||||||||  |||||||||||    
T  18496576 ttagagaagttgtcaattgtttgaggaactatttgaattgttttcattcgaatcattgtaattcatttttatcctaaa 18496653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 22067939 - 22067846
Alignment:
Q  129 tttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattca 222  Q
    |||| |||||||| ||||| ||| || | ||| ||||||||| ||||| ||||||||| |  ||||||||||| | | || |||||||||||||    
T  22067939 tttgcatttgaagacaaataagatgagagttaaaggagttgtcaatggtttgaggaacataatgtattgttttcactcgagtcattgtaattca 22067846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 23124887 - 23124976
Alignment:
Q  134 atttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcac 223  Q
    |||||||| ||||| ||| || | ||||||||||||||| |||  |||||||| | |||||||||||| | | || || |||||||||||    
T  23124887 atttgaagacaaataagatgagatttagaggagttgttagtggtctgaggaacatattgtattgttttcactcgagtcgttgtaattcac 23124976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 16577408 - 16577344
Alignment:
Q  126 ttctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttt 190  Q
    ||||||| |||||||| ||||||||||| || ||||||||||| | ||||| || || |||||||    
T  16577408 ttctttgcatttgaagacaaattagaagtcatttagaggagttttcaatggcttaagtaactttt 16577344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 16588254 - 16588318
Alignment:
Q  126 ttctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttt 190  Q
    ||||||| |||||||| ||||||||||| || ||||||||||| | ||||| || || |||||||    
T  16588254 ttctttgcatttgaagacaaattagaagtcatttagaggagttttcaatggcttaagtaactttt 16588318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 80 - 226
Target Start/End: Complemental strand, 29647728 - 29647581
Alignment:
Q  80 tgatgatggaataacatatgatattttt-gctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggat 178  Q
    |||||||||||||||||||||| ||||| ||||||||  |||||||||| |||| |||||||||||||||||||| ||||||||| |||||| | ||  |    
T  29647728 tgatgatggaataacatatgatgtttttagctatgttgttagtgtaattatttgcatttgaaggcaaattagaagtcaattagagtagttgtcattgatt 29647629  T
Q  179 tgaggaactttttgtattgtttttatttgactcattgtaattcacttt 226  Q
    ||||||||||||| ||||||||| |||||| || ||||||||||||||    
T  29647628 tgaggaactttttatattgttttcatttgagtcgttgtaattcacttt 29647581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 80 - 226
Target Start/End: Complemental strand, 27918165 - 27918019
Alignment:
Q  80 tgatgatggaataacatatgatattttt-gctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggat 178  Q
    |||||||||||||||||||||||||||| ||||||||| || |||||||||||| |||||||||||||||||||  ||| || ||||||||| | ||| |    
T  27918165 tgatgatggaataacatatgatatttttagctatgttt-taatgtaattctttgcatttgaaggcaaattagaattcaactataggagttgtcattggtt 27918067  T
Q  179 tgaggaactttttgtattgtttttatttgactcattgtaattcacttt 226  Q
    |||||||| ||  |||||||||| |||||| || ||||||||||||||    
T  27918066 tgaggaacgttgggtattgttttcatttgagtcgttgtaattcacttt 27918019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 22388888 - 22388796
Alignment:
Q  126 ttctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaat 219  Q
    ||||||| |||||||||||||||||||| |||||||||||||||| |||   |||||||||||||| ||||||||| |||||| ||||||||||    
T  22388888 ttctttgcatttgaaggcaaattagaagtcaattagaggagttgtcaataatttgaggaacttttt-tattgttttcatttgagtcattgtaat 22388796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 18116965 - 18117063
Alignment:
Q  129 tttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcacttta 227  Q
    ||||||||||||| ||||| ||| | || |||||||| ||| | |||| |||| |||| |||||||||||||| |||||| ||||||||||||||||||    
T  18116965 tttgtatttgaagacaaatgagaggtcatttagaggatttggtcatggtttgacgaacattttgtattgttttcatttgagtcattgtaattcacttta 18117063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 17415322 - 17415237
Alignment:
Q  135 tttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaatt 220  Q
    |||||||| |||||||||| || ||||||||||||| ||||| |||||||| ||||||||||||||| ||| || | |||||||||    
T  17415322 tttgaaggaaaattagaagtcatttagaggagttgtcaatgggttgaggaaatttttgtattgttttcattcgattgattgtaatt 17415237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 80 - 234
Target Start/End: Original strand, 19540969 - 19541125
Alignment:
Q  80 tgatgatggaataacatatgatatttttgc-tatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggat 178  Q
    ||||||||||| | ||||||| |||||||| ||||||| ||||    ||||||| ||||||||| |||||||||   |  || ||||||||||||||| |    
T  19540969 tgatgatggaacatcatatgagatttttgcctatgtttttagttattttctttgcatttgaaggaaaattagaatttatatataggagttgttaatggtt 19541068  T
Q  179 tgaggaactttttgtattgtttttatttgactcattgtaattca-ctttatcctaaa 234  Q
    ||||||||||||||||||  ||| | | || |||||||||||||  |||||||||||    
T  19541069 tgaggaactttttgtatttatttcaatcgagtcattgtaattcagttttatcctaaa 19541125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 21505308 - 21505200
Alignment:
Q  94 catatgatatttttg-ctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttg 192  Q
    ||||||||||||||| |||||||| |||| |  ||||||| |||||||| ||||| ||| || | |||||| |||||| ||||| ||||||| | | |||    
T  21505308 catatgatatttttggctatgtttttagtatttttctttgcatttgaagacaaataagatgagagttagagtagttgtcaatggtttgaggagcatattg 21505209  T
Q  193 tattgtttt 201  Q
    |||||||||    
T  21505208 tattgtttt 21505200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 234
Target Start/End: Original strand, 24047326 - 24047470
Alignment:
Q  92 aacatatgatatttttg-ctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttt 190  Q
    ||||||||||||||| | |||||||| ||||    || |||| ||||||||| |||| ||| |  | |||||| | |||| ||||| || |||||| |||    
T  24047326 aacatatgatattttaggctatgtttttagttattttatttgcatttgaaggaaaataagaggttatttagagaaattgtcaatggtttaaggaacattt 24047425  T
Q  191 tgtattgtttttatttgactcattgtaattcac-tttatcctaaa 234  Q
    ||||||||||| ||| || |||||||||||||| |||||||||||    
T  24047426 tgtattgttttcattcgagtcattgtaattcacttttatcctaaa 24047470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 220
Target Start/End: Complemental strand, 32276649 - 32276555
Alignment:
Q  126 ttctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaatt 220  Q
    ||||||| ||||||||| |||| ||| | || ||| ||||| ||| ||||| |||| |||| ||||| |||||||||||| || |||||||||||    
T  32276649 ttctttgcatttgaaggaaaataagaggtcatttaaaggagatgtcaatggtttgaagaacattttgcattgtttttattcgagtcattgtaatt 32276555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 226
Target Start/End: Complemental strand, 28278591 - 28278459
Alignment:
Q  94 catatgatattttt-gctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttg 192  Q
    |||||||||||||| ||||||||| ||||    ||||||| |||||||||||||| |||||| | |||||||| || | ||||| |||| |||| |  ||    
T  28278591 catatgatattttttgctatgttt-tagtacttttctttgcatttgaaggcaaataagaagagagttagaggatttctcaatggtttgaagaacatagtg 28278493  T
Q  193 tattgtttttatttgactcattgtaattcacttt 226  Q
    |||| |||| | |||| || ||||||||||||||    
T  28278492 tattattttcacttgagtcgttgtaattcacttt 28278459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 35707782 - 35707878
Alignment:
Q  126 ttctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattca 222  Q
    |||||||||||||||| ||||| ||| || | |||||| |||||| ||||| ||||| ||| | |||||||||||| | |||| |  ||||||||||    
T  35707782 ttctttgtatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaacatgttgtattgttttcacttgatttgttgtaattca 35707878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 22510911 - 22510966
Alignment:
Q  111 atgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggag 166  Q
    |||||| |||||||||| |||| |||||||||||||||| |||  |||||||||||    
T  22510911 atgtttttagtgtaattttttgcatttgaaggcaaattataagtaaattagaggag 22510966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 21849206 - 21849113
Alignment:
Q  129 tttgtatttgaaggcaaattagaagacaattagaggagtt-gttaatggattgaggaactttttgtattgtttttatttgactcattgtaattca 222  Q
    |||| |||| ||||||||| ||| | || | ||||||||| || ||||| ||||||||| |||||||||| |||| ||||| |||||||||||||    
T  21849206 tttgcatttcaaggcaaataagaggccattcagaggagtttgtcaatggtttgaggaacattttgtattg-ttttctttgagtcattgtaattca 21849113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 22525780 - 22525738
Alignment:
Q  134 atttgaaggcaaattagaagacaattagaggagttgttaatgg 176  Q
    |||||||||||||||||||| || ||||||||||||| |||||    
T  22525780 atttgaaggcaaattagaagtcatttagaggagttgtcaatgg 22525738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 201
Target Start/End: Original strand, 35031714 - 35031756
Alignment:
Q  159 tagaggagttgttaatggattgaggaactttttgtattgtttt 201  Q
    |||||||||||||||||| ||||||||| | ||||||||||||    
T  35031714 tagaggagttgttaatggtttgaggaacatattgtattgtttt 35031756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 21843106 - 21843029
Alignment:
Q  158 ttagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcac-tttatcctaaa 234  Q
    ||||||||||||  ||||| || |||||| | |||||||||||| ||| || ||||||||||| || |||||||||||    
T  21843106 ttagaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttacttttatcctaaa 21843029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 21844733 - 21844656
Alignment:
Q  158 ttagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcact-ttatcctaaa 234  Q
    ||||||||||||| ||||| || |||||| | || ||||||||| ||| || ||||||||||| ||| ||||||||||    
T  21844733 ttagaggagttgtcaatggttttaggaacatgttatattgttttcattcgagtcattgtaatttactcttatcctaaa 21844656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 1733087 - 1733175
Alignment:
Q  134 atttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattca 222  Q
    |||||||| ||||| ||| || | ||||||||||||| ||||  ||||| |||   |||||||||||| |||||| || ||||||||||    
T  1733087 atttgaagacaaatgagatgagagttagaggagttgtcaatgagttgagaaacaaattgtattgttttcatttgagtcgttgtaattca 1733175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 17152164 - 17152232
Alignment:
Q  158 ttagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcacttt 226  Q
    ||||||||||||| ||||| ||||||||  ||||||||| |||| ||| || || |||||||| |||||    
T  17152164 ttagaggagttgtcaatggtttgaggaatattttgtattattttcattcgagtcgttgtaattaacttt 17152232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 30998750 - 30998846
Alignment:
Q  126 ttctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattca 222  Q
    |||||||  ||||||| ||||| ||| || | ||||| ||||||| ||||| ||||||||| | |||||||||||| | |||| || ||||| ||||    
T  30998750 ttctttgcctttgaagacaaataagatgagagttagatgagttgtcaatggtttgaggaacatattgtattgttttcacttgagtcgttgtacttca 30998846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 80 - 226
Target Start/End: Complemental strand, 23157974 - 23157824
Alignment:
Q  80 tgatgatggaataacatatgatattttt-gctatgtttct---agtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatg 175  Q
    |||||||||||||||||||||| ||||| ||||||||| |   |||    ||||||| ||||||||| |||||||||| |||||||||||||||| ||||    
T  23157974 tgatgatggaataacatatgatgttttttgctatgttttttttagttattttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcaatg 23157875  T
Q  176 gattgaggaactttttgtattgtttttatttgactcattgtaattcacttt 226  Q
    | ||||||||||||| |||||||||| |||||| || ||||||||||||||    
T  23157874 gtttgaggaacttttggtattgttttcatttgagtcgttgtaattcacttt 23157824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 20694622 - 20694715
Alignment:
Q  129 tttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattca 222  Q
    |||| |||| |||| |||||| |||| | |||||||| |||| ||||| |||||||||||||||||||||||| ||| || |||||||||||||    
T  20694622 tttgcatttaaaggaaaattaaaagatatttagaggatttgtcaatggtttgaggaactttttgtattgttttcattcgagtcattgtaattca 20694715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 234
Target Start/End: Complemental strand, 7743039 - 7742896
Alignment:
Q  94 catatgatatttttg-ctatgtttctagtgtaattctttg-tatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaacttttt 191  Q
    ||||||||||||||| |||||||||||||    || |||  |||||||||||| || ||||| || ||||| ||||||| ||||| |||| |||| ||||    
T  7743039 catatgatatttttggctatgtttctagtcattttttttcatatttgaaggcagataagaagtcatttagacgagttgtcaatggtttgaagaacatttt 7742940  T
Q  192 gtattgtttttatttgactcattgtaattcac-tttatcctaaa 234  Q
    ||||||||||  || || || ||||||||||| |||||||||||    
T  7742939 gtattgttttcgttcgagtctttgtaattcacttttatcctaaa 7742896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 202
Target Start/End: Complemental strand, 22644047 - 22643924
Alignment:
Q  80 tgatgatggaataacatatgatattttt-gctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggat 178  Q
    ||||||| ||||||||||| |||||||| | ||| ||| ||||    ||||||||||||||||| |||||||||| || ||||||||||||| ||||| |    
T  22644047 tgatgattgaataacatataatatttttaggtatatttttagttattttctttgtatttgaaggaaaattagaagtcatttagaggagttgtcaatggtt 22643948  T
Q  179 tgaggaactttttgtattgttttt 202  Q
    |||  |||||| ||| || |||||    
T  22643947 tgattaactttgtgtttttttttt 22643924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 19331498 - 19331584
Alignment:
Q  134 atttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaatt 220  Q
    ||||||||| |||||||||  |||||||||||||||| ||| | ||||| ||||||||||||||| || ||| || || ||||||||    
T  19331498 atttgaaggaaaattagaattcaattagaggagttgtcaattgtttgagaaactttttgtattgtgttcattcgagtcgttgtaatt 19331584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 234
Target Start/End: Original strand, 20083445 - 20083553
Alignment:
Q  126 ttctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcactt 225  Q
    ||||||| |||||||||||||||| || |  |||||||||||||| ||| | ||||||||| |||| ||||||||||||| || |  |||||||||| ||    
T  20083445 ttctttgcatttgaaggcaaattaaaa-attattagaggagttgtcaatagtttgaggaacattttttattgtttttattcgagtatttgtaattcagtt 20083543  T
Q  226 -tatcctaaa 234  Q
     |||||||||    
T  20083544 ctatcctaaa 20083553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 24517335 - 24517408
Alignment:
Q  128 ctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttt 201  Q
    ||||| |||||||| ||||| ||| || ||||||||||||||| ||||| ||||||||| | ||||||||||||    
T  24517335 ctttgcatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaacatattgtattgtttt 24517408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 25367555 - 25367636
Alignment:
Q  83 tgatggaataacatatgatattttt-gctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagag 163  Q
    ||||||||||||||||||  |||||  |||||||| |||| || ||||||| ||||||||| |||||||||| |||||||||    
T  25367555 tgatggaataacatatgacgtttttaactatgtttttagtatatttctttgcatttgaaggaaaattagaagtcaattagag 25367636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 24411031 - 24410956
Alignment:
Q  160 agaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattca-ctttatcctaaa 234  Q
    ||||||||||| ||||| ||||||||  |||||||||||||| |||||| || ||||||||||  |||||||||||    
T  24411031 agaggagttgtcaatggtttgaggaaaattttgtattgttttcatttgagtcgttgtaattcagttttatcctaaa 24410956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 234
Target Start/End: Original strand, 18222479 - 18222581
Alignment:
Q  133 tatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcac-tttatcct 231  Q
    ||||||||| ||||| ||| || | ||||| ||||||| ||||| ||||| ||| | |||||||||||| | | || |||||||||||||| ||||||||    
T  18222479 tatttgaagacaaataagatgagagttagatgagttgtcaatggtttgagaaacatattgtattgttttaactcgagtcattgtaattcacttttatcct 18222578  T
Q  232 aaa 234  Q
    |||    
T  18222579 aaa 18222581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 222
Target Start/End: Complemental strand, 12340181 - 12340054
Alignment:
Q  94 catatgatatttttgctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgt 193  Q
    ||||||| ||||| ||||||||| |||| |  ||||||| |||||||| ||||| ||  || | ||||||||||||| ||||| ||||||||| | || |    
T  12340181 catatgacattttggctatgtttttagtatt-ttctttgcatttgaagacaaataaggtgagagttagaggagttgtcaatggtttgaggaacatattat 12340083  T
Q  194 attgtttttatttgactcattgtaattca 222  Q
    ||| |||| | |||  |||||||||||||    
T  12340082 attattttcacttgtgtcattgtaattca 12340054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 17382168 - 17382096
Alignment:
Q  129 tttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttt 201  Q
    |||| |||||||| ||||| ||| || | ||||||||||||| ||||| ||||||||| | ||||||||||||    
T  17382168 tttgcatttgaagacaaataagatgagagttagaggagttgtcaatggtttgaggaacatattgtattgtttt 17382096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 222
Target Start/End: Original strand, 26070409 - 26070549
Alignment:
Q  82 atgatggaataacatatgatatttttgctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattga 181  Q
    ||||||||| | |||||||| |||| ||||||||| ||||    ||||||| |||| ||||||||| ||| | || ||||||||||||| |||   ||||    
T  26070409 atgatggaacatcatatgattttttggctatgtttttagttattttctttgcattttaaggcaaataagaggtcatttagaggagttgtcaatcatttga 26070508  T
Q  182 ggaactttttgtattgtttttatttgactcattgtaattca 222  Q
    ||||  ||| |||||||||| ||| || | | |||||||||    
T  26070509 ggaaaatttagtattgttttcattcgagttaatgtaattca 26070549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 30072157 - 30072217
Alignment:
Q  126 ttctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaac 186  Q
    ||||||| |||||||| ||||| ||| || ||||||||||||||| ||||| |||||||||    
T  30072157 ttctttggatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaac 30072217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 15697469 - 15697390
Alignment:
Q  129 tttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttga 208  Q
    ||||||||| ||||||||||||||| ||   ||  |||||||  |||| | |||||||||||||||||||||| ||||||    
T  15697469 tttgtatttcaaggcaaattagaagtcatacagtagagttgtcgatggttagaggaactttttgtattgttttcatttga 15697390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 163
Target Start/End: Complemental strand, 16603785 - 16603710
Alignment:
Q  88 gaataacatatgatatttttgctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagag 163  Q
    |||||||||||||| |||||    ||||| ||||||| ||| ||||||||||||| ||||||||||  ||||||||    
T  16603785 gaataacatatgatgtttttaacttgtttttagtgtatttccttgtatttgaaggtaaattagaagtgaattagag 16603710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 4325461 - 4325399
Alignment:
Q  158 ttagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaatt 220  Q
    |||||| ||||||| |||| || |||| | |||||||||||||||||| || |||||||||||    
T  4325461 ttagagcagttgttcatggcttaaggaccattttgtattgtttttattcgaatcattgtaatt 4325399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 222
Target Start/End: Complemental strand, 24584875 - 24584764
Alignment:
Q  111 atgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgact 210  Q
    |||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |  || |||||||| ||||||||||||||| ||| || |    
T  24584875 atgtttttagtataattctttgtatttgaaggcaaattagaagtcaattagaggagttgtcatcggtttgaggaattttttgtattgttttcattcgagt 24584776  T
Q  211 cattgtaattca 222  Q
    ||||||||||||    
T  24584775 cattgtaattca 24584764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 234
Target Start/End: Complemental strand, 13583638 - 13583536
Alignment:
Q  133 tatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattca-ctttatcct 231  Q
    ||||| |||| |||||||||| |||||||||||||||||||| |  |||||||| |||| ||||||||||||| || || ||||||||||  ||||||||    
T  13583638 tattttaaggtaaattagaagtcaattagaggagttgttaatagtctgaggaaccttttctattgtttttattcgagtctttgtaattcagttttatcct 13583539  T
Q  232 aaa 234  Q
    |||    
T  13583538 aaa 13583536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 234
Target Start/End: Original strand, 30543694 - 30543849
Alignment:
Q  79 atgatgatggaataacatatgatattttt-gctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatgga 177  Q
    |||||||||||| ||| |||||||||||| ||||||||| |||| |  || |||| |||||||| ||||||| |||  ||||||||||||| | ||||      
T  30543694 atgatgatggaaaaacttatgatatttttagctatgtttttagtatttttttttgcatttgaagacaaattaaaagttaattagaggagttctcaatgt- 30543792  T
Q  178 ttgaggaactttttgtattgtttttatttgactcattgtaattcac-tttatcctaaa 234  Q
    |||| |||||||| |||||||||| |||||| |  ||||||||||| |||||||||||    
T  30543793 ttgatgaactttt-gtattgttttcatttgagttgttgtaattcacttttatcctaaa 30543849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 80 - 234
Target Start/End: Complemental strand, 30851282 - 30851126
Alignment:
Q  80 tgatgatggaataacatatgatattttt-gctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggat 178  Q
    |||||||||||   |||||||||||||| ||||||||| ||||    |||||| |||||||||| |||||||||| || ||| | |||||||| |||| |    
T  30851282 tgatgatggaacgtcatatgatatttttggctatgtttttagttattttctttatatttgaaggaaaattagaagtcatttataagagttgttgatggtt 30851183  T
Q  179 tgaggaactttttgtattgtttttatttgactcattgtaattca-ctttatcctaaa 234  Q
    ||||||| ||||| |||| |||| ||| || || ||||||||||  |||||||||||    
T  30851182 tgaggaagtttttatattattttcattcgaatcgttgtaattcagatttatcctaaa 30851126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 222
Target Start/End: Original strand, 10866920 - 10867063
Alignment:
Q  80 tgatgatggaataacatatgatattttt-gctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggat 178  Q
    ||||||||||| | |||||||||||||| | |||| || ||||    ||||||| ||| |||||||||| ||| | || |||||| |||||| ||||| |    
T  10866920 tgatgatggaacatcatatgatattttttggtatgattttagttattttctttgaattcgaaggcaaataagaggtcatttagagtagttgtcaatggtt 10867019  T
Q  179 tgaggaactttttgtattgtttttatttgactcattgtaattca 222  Q
    |||||||  |||||||||||||| |||||| || ||||||||||    
T  10867020 tgaggaatattttgtattgttttcatttgagtcgttgtaattca 10867063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 234
Target Start/End: Complemental strand, 14977243 - 14977133
Alignment:
Q  126 ttctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgttttt-atttgactcattgtaattcac- 223  Q
    ||||||| |||| ||| ||||| ||| || | ||||||||||||| ||||| ||||||||| | ||||||||||||| | | || ||||||||||||||     
T  14977243 ttctttgcattttaagacaaataagatgagagttagaggagttgtcaatggtttgaggaacatattgtattgtttttcactcgagtcattgtaattcact 14977144  T
Q  224 tttatcctaaa 234  Q
    |||||||||||    
T  14977143 tttatcctaaa 14977133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 11437398 - 11437494
Alignment:
Q  126 ttctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattca 222  Q
    |||||||||||| |||||||||| |||| |||||||||||||| | ||||| | || ||| ||||||| ||||||| ||| || || || |||||||    
T  11437398 ttctttgtatttaaaggcaaattggaagtcaattagaggagttttcaatggttcgaagaaatttttgtgttgttttcattcgagtcgttataattca 11437494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 234
Target Start/End: Original strand, 12956439 - 12956577
Alignment:
Q  98 tgatatttttg-ctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtatt 196  Q
    ||||||||||| |||||||| ||||    ||||||| ||||||||  |||| ||| || | ||||||||||||| ||||| ||||||||  | |||||||    
T  12956439 tgatatttttgtctatgtttttagtacttttctttgcatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaaaatattgtatt 12956538  T
Q  197 gtttttatttgactcattgtaattcac-tttatcctaaa 234  Q
    ||||| | | || |||| ||||||||| |||||||||||    
T  12956539 gttttcactcgagtcatcgtaattcacttttatcctaaa 12956577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 32239296 - 32239366
Alignment:
Q  156 aattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcacttt 226  Q
    ||||||||||||||| ||||| ||||| ||| | |||||||||||||| |||| || ||| ||||||||||    
T  32239296 aattagaggagttgtcaatggtttgagtaacatattgtattgtttttacttgagtcgttgcaattcacttt 32239366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 234
Target Start/End: Complemental strand, 14424940 - 14424839
Alignment:
Q  134 atttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattca-ctttatccta 232  Q
    ||||||||| ||||||||||  | |||||| ||| || ||||| |||||||||||||| ||| ||||| ||| || || ||||||||||  |||||||||    
T  14424940 atttgaaggaaaattagaagtaatttagagaagtagtcaatggtttgaggaactttttatatggttttcattcgagtcgttgtaattcagttttatccta 14424841  T
Q  233 aa 234  Q
    ||    
T  14424840 aa 14424839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 29291758 - 29291842
Alignment:
Q  134 atttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaat 219  Q
    |||||||||||||||||||| ||  |||||||||| | ||||| |||||||| ||||| |||| |||| |||||| || |||||||    
T  29291758 atttgaaggcaaattagaagtcatatagaggagttatcaatggtttgaggaattttttatatt-ttttcatttgagtcgttgtaat 29291842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 234
Target Start/End: Complemental strand, 35135558 - 35135449
Alignment:
Q  126 ttctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattca-ct 224  Q
    ||||||||||||||||| |||| | ||| || | | ||||||||| || || || ||| || |||||||||||||||| | || |||||||||||||  |    
T  35135558 ttctttgtatttgaaggtaaataaaaagtcattcaaaggagttgtcaaaggttttaggtacattttgtattgtttttactcgagtcattgtaattcattt 35135459  T
Q  225 ttatcctaaa 234  Q
    ||||||||||    
T  35135458 ttatcctaaa 35135449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 28902101 - 28902168
Alignment:
Q  159 tagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcacttt 226  Q
    |||||||||| ||||||| ||||| ||| | |||||||||||| ||| || || ||||||||||||||    
T  28902101 tagaggagttattaatggtttgagaaacatattgtattgttttcattcgagtcgttgtaattcacttt 28902168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 234
Target Start/End: Complemental strand, 6888322 - 6888217
Alignment:
Q  129 tttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcactt-ta 227  Q
    |||||||||||||| |||| | | | || ||||| ||||||| ||||| | ||| ||| ||||||||| |||| |||||| ||||||||||||| || ||    
T  6888322 tttgtatttgaaggtaaataaaaggtcatttagacgagttgtcaatggttagagaaacattttgtatt-ttttcatttgagtcattgtaattcagttcta 6888224  T
Q  228 tcctaaa 234  Q
    |||||||    
T  6888223 tcctaaa 6888217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 13530259 - 13530166
Alignment:
Q  108 gctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttt 201  Q
    ||||||||| ||||   |||||||| | |||||| ||||| ||| | || ||||||||| |||  |||| ||||||||| ||||||||||||||    
T  13530259 gctatgtttttagttatattctttgcaattgaagacaaataagaggtcatttagaggagatgtcgatggtttgaggaacattttgtattgtttt 13530166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 13619798 - 13619705
Alignment:
Q  108 gctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttt 201  Q
    ||||||||| ||||   |||||||| | |||||| ||||| ||| | || ||||||||| |||  |||| ||||||||| ||||||||||||||    
T  13619798 gctatgtttttagttatattctttgcaattgaagacaaataagaggtcatttagaggagatgtcgatggtttgaggaacattttgtattgtttt 13619705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 80 - 226
Target Start/End: Original strand, 28422385 - 28422532
Alignment:
Q  80 tgatgatggaataacatatgatatttttg-ctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggat 178  Q
    ||||||| ||||||||||| || |||||  ||||| || ||||||||||||||| ||||||||| |||||||||| ||||||||||||||||   | | |    
T  28422385 tgatgatagaataacatattatgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtt 28422484  T
Q  179 tgaggaactttttgtattgtttttatttgactcattgtaattcacttt 226  Q
    ||||||| ||||||||||||||| ||| || |||||||||||||||||    
T  28422485 tgaggaattttttgtattgttttcattcgaatcattgtaattcacttt 28422532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 232
Target Start/End: Complemental strand, 19546129 - 19546012
Alignment:
Q  111 atgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgact 210  Q
    |||||| ||||||| ||||||| |||||||||||||||||||| ||||     |  || | ||||| ||||||||||| ||||||||||||||||||| |    
T  19546129 atgtttttagtgtatttctttgcatttgaaggcaaattagaagtcaat-----ggtttatcaatggtttgaggaacttattgtattgtttttatttgagt 19546035  T
Q  211 cattgtaattcact-ttatccta 232  Q
    |||||||||||||| ||||||||    
T  19546034 cattgtaattcactattatccta 19546012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 80 - 234
Target Start/End: Complemental strand, 21829315 - 21829159
Alignment:
Q  80 tgatgatggaataacatatgatatttttg-ctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggat 178  Q
    ||||||||| ||| ||||||||||||||| |||| ||| || |    || |||| ||||||||| |||| ||| | || ||||||||||||| ||||| |    
T  21829315 tgatgatgggatatcatatgatatttttgactatatttttatttattttatttgcatttgaaggaaaataagaggtcatttagaggagttgtcaatggtt 21829216  T
Q  179 tgaggaactttttgtattgtttttatttgactcattgtaattca-ctttatcctaaa 234  Q
    |||||||| ||||||||| |||| |||||| || ||||||||||  |||||||||||    
T  21829215 tgaggaacattttgtattattttcatttgagtcgttgtaattcagttttatcctaaa 21829159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 234
Target Start/End: Original strand, 26297746 - 26297837
Alignment:
Q  144 aaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattc-actttatcctaaa 234  Q
    |||||||||| || ||||||||||||||||||| ||||| |||||||| ||||||||| ||| || || ||||||||| | |||||||||||    
T  26297746 aaattagaagtcagttagaggagttgttaatggtttgagaaactttttatattgttttcattcgagtcgttgtaattcaattttatcctaaa 26297837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 222
Target Start/End: Complemental strand, 8402684 - 8402590
Alignment:
Q  128 ctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattca 222  Q
    ||||| |||||||||||||| ||| |  | ||||||||||||| ||||| |||||||||  ||||||||||||| ||| || || ||||||||||    
T  8402684 ctttgcatttgaaggcaaataagatgtaatttagaggagttgtcaatggtttgaggaacaatttgtattgttttcattcgagtcgttgtaattca 8402590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 26387977 - 26387899
Alignment:
Q  129 tttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttg 207  Q
    |||| ||||||||||||||||||||  |||||||| |||||| ||||| ||||| ||| ||||||||| |||| |||||    
T  26387977 tttgcatttgaaggcaaattagaagtaaattagagtagttgtcaatggtttgagaaacgttttgtattcttttcatttg 26387899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 13911244 - 13911344
Alignment:
Q  126 ttctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcactt 225  Q
    |||||||||||||||| ||| | || ||| |  |||| ||||||| ||||| ||||||||| | | |||||||||| | |||| ||||||||||||||||    
T  13911244 ttctttgtatttgaagacaagtaagtagagagatagaagagttgtcaatggtttgaggaacatatggtattgttttcacttgaatcattgtaattcactt 13911343  T
Q  226 t 226  Q
    |    
T  13911344 t 13911344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 234
Target Start/End: Original strand, 18474159 - 18474258
Alignment:
Q  135 tttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcact-ttatcctaa 233  Q
    ||||||| ||||||||||| ||||||||||| || | ||| | ||||||||||  |||||||| ||| ||| || ||||||||||||||| |||||||||    
T  18474159 tttgaagacaaattagaagtcaattagaggatttatcaatcgtttgaggaactgattgtattg-tttcattcgattcattgtaattcactgttatcctaa 18474257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 33577754 - 33577822
Alignment:
Q  167 ttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcactt-tatcctaaa 234  Q
    |||| ||||| |||| |||| ||||||||||||||||||||| ||||||||||||| || |||||||||    
T  33577754 ttgtcaatggtttgaagaacgttttgtattgtttttatttgattcattgtaattcatttatatcctaaa 33577822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 230
Target Start/End: Complemental strand, 33914698 - 33914594
Alignment:
Q  126 ttctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcactt 225  Q
    ||||||| |||| ||| ||||| ||| || | ||| ||||||||| || || ||||||||| | |||||||||||||| | || || ||||||||||| |    
T  33914698 ttctttgcatttcaagacaaataagatgagagttataggagttgtcaacggtttgaggaacatattgtattgtttttactcgagtcgttgtaattcacgt 33914599  T
Q  226 tatcc 230  Q
    |||||    
T  33914598 tatcc 33914594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 11474871 - 11474934
Alignment:
Q  172 aatggattgaggaactttttgtattgtttttatttgactcattgtaattc-actttatcctaaa 234  Q
    ||||| ||||||||||||||||||| |||| ||| ||||| ||||||||| | |||||||||||    
T  11474871 aatggtttgaggaactttttgtattattttcattcgactcgttgtaattcaattttatcctaaa 11474934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 234
Target Start/End: Complemental strand, 25919647 - 25919489
Alignment:
Q  80 tgatgatggaataacatatgatatttttgct-atgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggat 178  Q
    ||||||||||  | |||||||||||| || | |||||| ||||  | ||||||| |||||||| ||||| ||| || | ||||| || |||| ||||| |    
T  25919647 tgatgatggagcatcatatgatatttctggttatgtttttagtacatttctttgaatttgaagacaaataagatgagagttagatgatttgtcaatggtt 25919548  T
Q  179 tgaggaactttt--tgtattgtttttatttgactcattgtaattcac-tttatcctaaa 234  Q
    |||||||| | |  ||| ||||||||| |||| |||| ||||||||| |||||||||||    
T  25919547 tgaggaacatatattgtgttgtttttacttgagtcatcgtaattcacttttatcctaaa 25919489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 30493396 - 30493325
Alignment:
Q  129 tttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttt 201  Q
    |||| |||||||||||||||||||| |||| |||  ||||| | |||  ||||| ||||||||||||||||||    
T  30493396 tttgcatttgaaggcaaattagaag-caataagacaagttggttatgatttgagaaactttttgtattgtttt 30493325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 12034 - 12156
Alignment:
Q  80 tgatgatggaataacatatgatattttt-gctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggat 178  Q
    |||| ||||| ||||||||||| | ||| ||||||||| |||||||||| |||| ||||||||| |||||||||| | ||||||||| |||| ||| | |    
T  12034 tgataatggattaacatatgatgtctttagctatgtttttagtgtaattatttgcatttgaaggtaaattagaagtctattagaggaattgtcaatagtt 12133  T
Q  179 tgaggaactttttgtattgtttt 201  Q
    |||||||||||||||||||||||    
T  12134 tgaggaactttttgtattgtttt 12156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 86 - 201
Target Start/End: Original strand, 1604 - 1720
Alignment:
Q  86 tggaataacatatgatattttt-gctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgagga 184  Q
    |||| ||||||||||| | ||| ||||||||| |||||||||| |||| ||||||||| |||||||||| | ||||||||| |||| ||| | |||||||    
T  1604 tggattaacatatgatgtctttagctatgtttttagtgtaattatttgcatttgaaggtaaattagaagtctattagaggaattgtcaatagtttgagga 1703  T
Q  185 actttttgtattgtttt 201  Q
    |||||||||||||||||    
T  1704 actttttgtattgtttt 1720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 86 - 201
Target Start/End: Complemental strand, 24507761 - 24507645
Alignment:
Q  86 tggaataacatatgatattttt-gctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgagga 184  Q
    |||| ||||||||||| | ||| ||||||||| |||||||||| |||| ||||||||| |||||||||| | ||||||||| |||| ||| | |||||||    
T  24507761 tggattaacatatgatgtctttagctatgtttttagtgtaattatttgcatttgaaggtaaattagaagtctattagaggaattgtcaatagtttgagga 24507662  T
Q  185 actttttgtattgtttt 201  Q
    |||||||||||||||||    
T  24507661 actttttgtattgtttt 24507645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 17198880 - 17198795
Alignment:
Q  134 atttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattca 222  Q
    |||||||||||||||||||| || ||||||   |||||||||| |||||||||||||||||||||||| || ||| |  ||||||||||    
T  17198880 atttgaaggcaaattagaagtcatttagag---ttgttaatggtttgaggaactttttgtattgttttcatctgagttgttgtaattca 17198795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 26512910 - 26512813
Alignment:
Q  129 tttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcacttt 226  Q
    |||| |||||||||||||| ||| | || ||||||||||||| ||||| ||| | ||| |||||||||||||| ||| || || ||||||||||||||    
T  26512910 tttgcatttgaaggcaaataagaggtcatttagaggagttgtcaatggtttgtgtaacattttgtattgttttcattcgattcgttgtaattcacttt 26512813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 26518026 - 26517929
Alignment:
Q  129 tttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcacttt 226  Q
    |||| |||||||||||||| ||| | || ||||||||||||| ||||| ||| | ||| |||||||||||||| ||| || || ||||||||||||||    
T  26518026 tttgcatttgaaggcaaataagaggtcatttagaggagttgtcaatggtttgtgtaacattttgtattgttttcattcgattcgttgtaattcacttt 26517929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 20495978 - 20495834
Alignment:
Q  78 catgatgatggaataacatatgatatttttg-ctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatgg 176  Q
    ||||||||||||| | |||||||||  || | |||||||| ||||    |||||||||||||||||||| | ||| | ||  ||||| |||| | |||||    
T  20495978 catgatgatggaacatcatatgataaattaggctatgtttttagtaattttctttgtatttgaaggcaattaagaggtcatatagagaagttatcaatgg 20495879  T
Q  177 attgaggaactttttgtattgtttttatttgactcattgtaattca 222  Q
     ||||||||| ||||| ||||||||||||||| || ||||||||||    
T  20495878 tttgaggaacattttg-attgtttttatttgagtcgttgtaattca 20495834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 14768395 - 14768307
Alignment:
Q  135 tttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcac 223  Q
    ||||||||||||| |||    ||||||||||||||| | ||| |||||||| ||||||||||| ||| ||| || | ||||||||||||    
T  14768395 tttgaaggcaaatgagagattaattagaggagttgtcattggtttgaggaattttttgtattggtttcattcgagttattgtaattcac 14768307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 32930605 - 32930534
Alignment:
Q  129 tttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgttt 200  Q
    |||| |||||||||||||| ||| | || ||||||||||||| ||||| ||| ||||| |||||| ||||||    
T  32930605 tttgcatttgaaggcaaataagatgtcatttagaggagttgtcaatggtttgcggaacattttgttttgttt 32930534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 13759584 - 13759491
Alignment:
Q  129 tttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattca 222  Q
    |||||||||||||  |||| ||| || | ||||||||||||| ||||| ||||||||| | ||| |||||||| | | || || ||||||||||    
T  13759584 tttgtatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaacatattgaattgttttcactcgaatcgttgtaattca 13759491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 13835591 - 13835680
Alignment:
Q  137 tgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcacttt 226  Q
    ||||| ||||| ||||| || | |||||||||||   ||| ||||||||| ||| || |||||||||||||| ||| | |||||||||||    
T  13835591 tgaagacaaataagaagtcattaagaggagttgtccttggtttgaggaacatttggtgttgtttttatttgattcactataattcacttt 13835680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 16387352 - 16387287
Alignment:
Q  158 ttagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcac 223  Q
    ||||| ||||||| ||||| |||||||| || |||||||||||||||| ||  | |||||||||||    
T  16387352 ttagatgagttgtcaatggtttgaggaatttattgtattgtttttattcgagccgttgtaattcac 16387287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 1755650 - 1755598
Alignment:
Q  173 atggattgaggaactttttgtattgtttttatttgactcattgtaattcactt 225  Q
    |||| ||||||| | |||||||||||||| |||||| || |||||||||||||    
T  1755650 atggtttgaggatcattttgtattgttttcatttgattcgttgtaattcactt 1755598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 13830918 - 13830870
Alignment:
Q  178 ttgaggaactttttgtattgtttttatttgactcattgtaattcacttt 226  Q
    ||||||||| ||| || |||||||||||||| ||| |||||||||||||    
T  13830918 ttgaggaacatttggtgttgtttttatttgattcagtgtaattcacttt 13830870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 58732 - 58817
Alignment:
Q  134 atttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaat 219  Q
    |||||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||||||| ||| |  ||||||||||    
T  58732 atttgaaggcaaattagaagtcaatcagaggagttgtcaatggtttgaggaactttttgtattgttttcattcgggtcattgtaat 58817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 85 - 229
Target Start/End: Original strand, 1723 - 1867
Alignment:
Q  85 atggaataacatatgatatttttgctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgagga 184  Q
    ||||||||||||||||| ||||  |||||||| |||  |||||||||| ||||||||| | |||||||| |||||| |||| |||| | ||| |||| ||    
T  1723 atggaataacatatgatgttttgcctatgtttttagcctaattctttgcatttgaaggaatattagaagtcaattataggatttgtcattggtttgaaga 1822  T
Q  185 actttttgtattgtttttatttgactcattgtaattcactttatc 229  Q
    || ||||||||||||||  || ||  | |||||||||||||||||    
T  1823 accttttgtattgttttcgttcgagccgttgtaattcactttatc 1867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 19601762 - 19601886
Alignment:
Q  111 atgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgact 210  Q
    |||||| ||||||||||||||| |||| ||||||||||| ||| |||||||||||||||| | ||| |||||||||||||| |||| |||| |||  | |    
T  19601762 atgtttttagtgtaattctttgcatttaaaggcaaattaaaagtcaattagaggagttgtcattggtttgaggaactttttctatttttttcattcaaat 19601861  T
Q  211 cattgtaattcac-tttatcctaaa 234  Q
      ||||||||||| |||||||||||    
T  19601862 tgttgtaattcacttttatcctaaa 19601886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 21077212 - 21077308
Alignment:
Q  126 ttctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattca 222  Q
    ||||||| |||||||||||||||||||| || ||||||||||||| ||||| ||||| ||| ||||||||| |||||||| || || ||||| ||||    
T  21077212 ttctttgcatttgaaggcaaattagaagtcatttagaggagttgtcaatggtttgagaaaccttttgtattatttttattcgagtcgttgtagttca 21077308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 226
Target Start/End: Original strand, 22119578 - 22119725
Alignment:
Q  80 tgatgatggaataacatatgatatttt-tgctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggat 178  Q
    ||||||| ||| | ||||||||||||| |||||||||| ||||    ||||||| ||||||||||||||||||||  | ||| ||||||||| ||||| |    
T  22119578 tgatgatagaacatcatatgatattttatgctatgtttttagttattttctttgcatttgaaggcaaattagaagttatttataggagttgtcaatggtt 22119677  T
Q  179 tgaggaactttttgtattgtttttatttgactcattgtaattcacttt 226  Q
    ||||||||   ||||| ||||||  || || ||||||||||| |||||    
T  22119678 tgaggaacaaattgtaatgttttcgttcgagtcattgtaatttacttt 22119725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 226
Target Start/End: Original strand, 10576385 - 10576532
Alignment:
Q  80 tgatgatggaataacatatgatatttttg-ctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggat 178  Q
    |||||||||| || ||||||||||||| | |||||||| ||||    ||||||  ||||||||| |||| |||   || |||||| ||||||  |||| |    
T  10576385 tgatgatggagtatcatatgatattttagactatgtttttagttattttctttccatttgaaggaaaataagagatcatttagagaagttgtccatggtt 10576484  T
Q  179 tgaggaactttttgtattgtttttatttgactcattgtaattcacttt 226  Q
    ||| |||| |||||||||||||| ||| || |||||||||||||||||    
T  10576485 tgaagaacattttgtattgttttcattcgagtcattgtaattcacttt 10576532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 29437448 - 29437514
Alignment:
Q  126 ttctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttg 192  Q
    |||||||||||||||||||||||||||  |||||||| ||||||| ||| | |||||||| ||||||    
T  29437448 ttctttgtatttgaaggcaaattagaactcaattagatgagttgtcaatagtttgaggaattttttg 29437514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 23353605 - 23353698
Alignment:
Q  129 tttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattca 222  Q
    |||| |||||||| || |||||||| || |||||| | || | ||||| || ||||||||||||||||||||| ||| || || ||||||||||    
T  23353605 tttgcatttgaagtcagattagaagtcatttagagtaattatcaatggtttaaggaactttttgtattgttttcattcgagtcgttgtaattca 23353698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 226
Target Start/End: Original strand, 24925787 - 24925884
Alignment:
Q  129 tttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcacttt 226  Q
    |||||||||||||  |||| ||||| || ||| | ||||||| ||| | ||||| ||| |||||||||||||| |||||| ||  |||||||||||||    
T  24925787 tttgtatttgaagataaataagaagtcatttaaaagagttgtcaatcgtttgagtaacattttgtattgttttcatttgagtcgctgtaattcacttt 24925884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 9783111 - 9783023
Alignment:
Q  134 atttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattca 222  Q
    |||||||||||||| ||| || | ||||||||||||| ||| | ||||||||| | |||||||||||| | |  | |||||||||||||    
T  9783111 atttgaaggcaaatgagatgagagttagaggagttgtcaatagtttgaggaacatattgtattgttttcactcaattcattgtaattca 9783023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 27302790 - 27302853
Alignment:
Q  159 tagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattca 222  Q
    ||||| |||||| ||||| ||||||||| |||||||||||||| | | || |||||||||||||    
T  27302790 tagagaagttgtcaatggtttgaggaacattttgtattgttttcactcgagtcattgtaattca 27302853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 234
Target Start/End: Complemental strand, 34864427 - 34864320
Alignment:
Q  126 ttctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcac-t 224  Q
    |||||||||||||||| ||||| |||  | | ||||||||||||| ||||| ||||||||| | |  ||||||||| | | |  |||||||||||||| |    
T  34864427 ttctttgtatttgaagacaaataagataaaagttagaggagttgtcaatggtttgaggaacgtatcatattgttttcactcg--tcattgtaattcactt 34864330  T
Q  225 ttatcctaaa 234  Q
    ||||||||||    
T  34864329 ttatcctaaa 34864320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 17339941 - 17339880
Alignment:
Q  134 atttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtat 195  Q
    |||| ||||||||| ||| |||| ||||||||||| |  |||||||||||||| ||||||||    
T  17339941 atttaaaggcaaataagaggacatttagaggagttatccatggattgaggaacattttgtat 17339880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 52271427 - 52271278
Alignment:
Q  79 atgatgatggaataacatatgatatttttg-ctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatgga 177  Q
    ||||||||||||||||||||||| |||||  |||||||| ||||||||||||||| |||| |||||||| ||| |  ||| |||||||||||| | |||     
T  52271427 atgatgatggaataacatatgatgtttttaactatgtttttagtgtaattctttgcatttaaaggcaaaataggattcaa-tagaggagttgtcattggt 52271329  T
Q  178 ttgaggaactttttgtattgtttttatttgactcattgtaattcactttat 228  Q
    |||||||| ||| |||| | |||| |||| | || |||| |||||||||||    
T  52271328 ttgaggaaatttgtgtacttttttcatttaagtcgttgtcattcactttat 52271278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 220
Target Start/End: Complemental strand, 15299005 - 15298911
Alignment:
Q  126 ttctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaatt 220  Q
    ||||||| ||||| |||||||||||||| || ||| | ||||||| ||||| |||||||| |||||||||||| || |||||| |||||||||||    
T  15299005 ttctttgcatttgcaggcaaattagaagtcatttacaagagttgtcaatggtttgaggaagtttttgtattgtattcatttgaatcattgtaatt 15298911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 234
Target Start/End: Original strand, 25126462 - 25126568
Alignment:
Q  129 tttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattca-cttta 227  Q
    |||| ||||||||||||| |||||| || || |||||||||| ||||| ||||| || |||||||||||||||||||||| || | ||||||||  ||||    
T  25126462 tttgcatttgaaggcaaaatagaagtcatttggaggagttgtcaatggtttgagaaattttttgtattgtttttatttgagtcgtggtaattcagtttta 25126561  T
Q  228 tcctaaa 234  Q
    |||||||    
T  25126562 tcctaaa 25126568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 21551060 - 21550940
Alignment:
Q  80 tgatgatggaataacatatgatatttt-tgctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggat 178  Q
    ||||||||||  | |||| |||||||| |||||||||||||||   ||| | || |||||||||||||| ||| | ||||||||||||||||  |||| |    
T  21551060 tgatgatggatcatcatacgatattttgtgctatgtttctagtt--attttctgcatttgaaggcaaatcagaggtcaattagaggagttgtctatggtt 21550963  T
Q  179 tgaggaactttttgtattgtttt 201  Q
    |||||||| ||||||||||||||    
T  21550962 tgaggaacattttgtattgtttt 21550940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 18795142 - 18795260
Alignment:
Q  108 gctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttg 207  Q
    |||||||||||||||   ||||||| ||||||||| |||| ||| | || |||||||| || | ||||| ||||||||| |||||||| ||||| |||||    
T  18795142 gctatgtttctagtgattttctttgcatttgaaggaaaataagaggtcatttagaggatttatcaatggtttgaggaacattttgtatcgttttcatttg 18795241  T
Q  208 actcattgtaattcacttt 226  Q
    | | ||||||||| |||||    
T  18795242 agtaattgtaatttacttt 18795260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 21548619 - 21548736
Alignment:
Q  118 tagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgta 217  Q
    ||||||| || |||| || |||||||||||||| || | |||| |||||||| | |||| ||||| |||||||| ||||||||| ||| || || |||||    
T  21548619 tagtgtatttatttgcatatgaaggcaaattagtagtccattaaaggagttgatgatggtttgagaaactttttatattgttttcattcgagtcgttgta 21548718  T
Q  218 attca-ctttatcctaaa 234  Q
    |||||  |||||||||||    
T  21548719 attcagttttatcctaaa 21548736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 225
Target Start/End: Original strand, 34381690 - 34381786
Alignment:
Q  129 tttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcactt 225  Q
    |||| |||||||||||||| ||| |  | ||||||||||||||||||| |||| |||| | || ||||||||| ||| || || |||||||||||||    
T  34381690 tttgcatttgaaggcaaataagatgtaatttagaggagttgttaatggtttgaagaacatattatattgttttcattcgagtcgttgtaattcactt 34381786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 234
Target Start/End: Original strand, 50047113 - 50047269
Alignment:
Q  80 tgatgatggaataacatatgatatttttg-ctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggat 178  Q
    |||||| |||||| ||||||||||||||| |||||||| |  |    ||||||| |||||||| ||||| ||| || || |||||||||||| ||||  |    
T  50047113 tgatgacggaataccatatgatatttttggctatgtttttgatacttttctttgcatttgaagacaaataagatgaaaagtagaggagttgtcaatgatt 50047212  T
Q  179 tgaggaactttttgtattgtttttatttgactcattgtaattcac-tttatcctaaa 234  Q
    |||| ||| | |||||||||||| | | || |||| ||||||||| |||||||||||    
T  50047213 tgagaaacatattgtattgttttcactcgagtcatggtaattcacttttatcctaaa 50047269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 234
Target Start/End: Complemental strand, 19257939 - 19257830
Alignment:
Q  126 ttctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattc-act 224  Q
    |||||| |||||||||  |||||||||  || ||||||  ||||| ||||  |||||||||||| ||||||||||| |||  | |||||||||||| | |    
T  19257939 ttctttatatttgaagaaaaattagaattcatttagagaggttgtcaatgatttgaggaactttctgtattgttttcattctagtcattgtaattcgatt 19257840  T
Q  225 ttatcctaaa 234  Q
    ||||||||||    
T  19257839 ttatcctaaa 19257830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 30675471 - 30675563
Alignment:
Q  134 atttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcacttt 226  Q
    ||||| || ||||| ||| || ||||||||||||||| ||||| ||||||||| | |||||||||||| | | || || ||||||| ||||||    
T  30675471 atttgtagacaaataagatgaaaattagaggagttgtcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaatacacttt 30675563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 26854424 - 26854357
Alignment:
Q  155 caattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattca 222  Q
    ||||||||| |||||||||||  ||||||||||||||||||| |||| |||  | || ||||||||||    
T  26854424 caattagagaagttgttaatgttttgaggaactttttgtattcttttcattcaagtcgttgtaattca 26854357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 222
Target Start/End: Complemental strand, 12424083 - 12423954
Alignment:
Q  94 catatgatatttttgctatgtttctagtg-taattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttg 192  Q
    ||||||||||||| ||||||||| ||||  |  ||||||| |||||||| ||||| ||| || |   ||||| ||||||||||| ||||||||| | |      
T  12424083 catatgatattttggctatgtttttagtactttttctttgcatttgaagacaaataagatgagagacagaggcgttgttaatggtttgaggaacatatga 12423984  T
Q  193 tattgtttttatttgactcattgtaattca 222  Q
    ||||||||| | | || |||||||||||||    
T  12423983 tattgttttcactcgagtcattgtaattca 12423954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 234
Target Start/End: Original strand, 26102036 - 26102145
Alignment:
Q  126 ttctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcac-t 224  Q
    ||||||| ||||||| |||||| ||| | || |||||| | || | ||||| ||||||| | |||||||||||||| ||| || |  ||||||||||| |    
T  26102036 ttctttgcatttgaacgcaaataagaggtcatttagagaatttatcaatggtttgaggaccattttgtattgttttcattcgagttgttgtaattcactt 26102135  T
Q  225 ttatcctaaa 234  Q
    ||||||||||    
T  26102136 ttatcctaaa 26102145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 234
Target Start/End: Original strand, 31313531 - 31313640
Alignment:
Q  126 ttctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcac-t 224  Q
    ||||||| |||||||||||||| |||   || |||||| |||||| ||||  || |||||| ||||||||||||||  ||  | || ||||||||||| |    
T  31313531 ttctttgcatttgaaggcaaataagagttcatttagagaagttgtcaatgtctttaggaacgttttgtattgttttcgttcaagtcgttgtaattcactt 31313630  T
Q  225 ttatcctaaa 234  Q
    ||||||||||    
T  31313631 ttatcctaaa 31313640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 222
Target Start/End: Complemental strand, 11880 - 11737
Alignment:
Q  80 tgatgatggaataacatatgatatttttg-ctatgtttctagtgtaattctttgtatttgaaggcaaattagaagacaattagaggagttgttaatggat 178  Q
    ||||||| ||| | ||||||||||||| | |||||||| ||||    || |||| ||||||||||||| |||||| || ||||||||||||| ||||  |    
T  11880 tgatgattgaacatcatatgatattttaggctatgtttttagttattttatttgcatttgaaggcaaaatagaagtcatttagaggagttgtcaatgatt 11781  T
Q  179 tgaggaactttttgtattgtttttatttgactcattgtaattca 222  Q
    ||| ||||||||||||| ||||| |||||| || ||||||||||    
T  11780 tgatgaactttttgtatagttttcatttgaatcgttgtaattca 11737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 1454 - 1522
Alignment:
Q  158 ttagaggagttgttaatggattgaggaactttttgtattgtttttatttgactcattgtaattcacttt 226  Q
    ||||||||||||| |||   ||||||| | |||||||||||||| ||| || ||||| |||||||||||    
T  1454 ttagaggagttgtcaatattttgaggagcattttgtattgttttcattcgattcattttaattcacttt 1522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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