View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13993_low_4 (Length: 626)
Name: NF13993_low_4
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 8393588 - 8393286
Alignment:
| Q |
1 |
gggttgtggcgtaccaaagaagacacatgtaaactaataagatcacacccatgcctatgcaaggcaggaatagtgccatcagtattgcatctaacatctc |
100 |
Q |
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| T |
8393588 |
gggttgtggcgtaccaaagaagacacatgtaaactaataagatcacacccatgcctatgcaaggcaggaatagtgccatcagtattgcatctaacatctc |
8393489 |
T |
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| Q |
101 |
cagtttgttttc-ttgatatattgctgaatgaatgaatcaatgaggtttttggattgttattgttattgttatatgttaggttgtgaataaattaagttt |
199 |
Q |
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| T |
8393488 |
cagtttgttttctttgatatattgcagaatcaatcaatgaatcaggtttttgg------attgttattgttatattttaggttgtgaataaattaagttt |
8393395 |
T |
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| Q |
200 |
tgtttattgagtgtggagaagaaaagagatggtgtggtatggtatggtatgggaaatgggaatcattgggtttgttatttcctcttgttttctagtaatt |
299 |
Q |
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| T |
8393394 |
tgtttattgagtgtggagaagaaaagagagggtgtggtatggtatggtatgggaaatgggaatcattgggtttgttattttctcttgttttctagtaatt |
8393295 |
T |
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| Q |
300 |
tcggtgttc |
308 |
Q |
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| T |
8393294 |
ttggtgttc |
8393286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 369 - 616
Target Start/End: Complemental strand, 8393231 - 8392978
Alignment:
| Q |
369 |
agatatgaacctcatacctttgactatatattatgcattgtacatatcagttaaattaaactcacaaaaacaccca-ttttatttttcatacagatattc |
467 |
Q |
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| T |
8393231 |
agatttgaatctcatacctttaactatatattatgcattgtacataccagctaaattaaactcacatagacacccccttttatttttcataccaatattc |
8393132 |
T |
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| Q |
468 |
aacatctcattttccttttaccactctttcttattatcatatattcaccatatgtattattttactctcttgatttctttttctctctagtgg-----ta |
562 |
Q |
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| T |
8393131 |
aacatctcattttccttttaccactctttcttattatcatatattcaccatatgtattattttactctcttgatttctttttctctctagtggtaaagta |
8393032 |
T |
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| Q |
563 |
aaatggttttgggtgttgaagaattattttccttcttttaatttgtgtatgtat |
616 |
Q |
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| T |
8393031 |
aaatggttttgggtgttgaagaattattttccttcttttaatttgtgtatgtat |
8392978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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