View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13993_low_40 (Length: 234)
Name: NF13993_low_40
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 24 - 227
Target Start/End: Original strand, 41962531 - 41962734
Alignment:
| Q |
24 |
tcgtttccttaactcaacccaccactttctccaccggtgctatcatctacaaacaccccatttctctctttgacatttcaacaaacaccacgtcttcatt |
123 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41962531 |
tcgtttccttaactcagcccaccactttctccaccggtgctatcatctacaaacaccccatttctctctttgacatttcaacaaacaccacgtcttcatt |
41962630 |
T |
|
| Q |
124 |
ctcaacaacgttctctttctctattacaaattcaaatcccacttcctttggtgatggcattgctttcttcctttcccccaacattctctcatcaacatca |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41962631 |
ctcaacaacgttctctttctctattacaaattcaaatcccacttcctttggtgatggcattgctttcttcctttcccccaacaatctctcatcaacatcg |
41962730 |
T |
|
| Q |
224 |
tcac |
227 |
Q |
| |
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|||| |
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|
| T |
41962731 |
tcac |
41962734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 24 - 227
Target Start/End: Original strand, 1224005 - 1224208
Alignment:
| Q |
24 |
tcgtttccttaactcaacccaccactttctccaccggtgctatcatctacaaacaccccatttctctctttgacatttcaacaaacaccacgtcttcatt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1224005 |
tcgtttccttaactcaacccaccactttctccaccggtgctatcatctacaaacaccccatttctctctttgacatttcaacaaacaccacgtcttcatt |
1224104 |
T |
|
| Q |
124 |
ctcaacaacgttctctttctctattacaaattcaaatcccacttcctttggtgatggcattgctttcttcctttcccccaacattctctcatcaacatca |
223 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
1224105 |
ctcaacaacgttctctttctctattacaaattcaaatcccacttcctttggtgatggcattgttttcttcctttcccccaacaatctctcatcaacatcg |
1224204 |
T |
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| Q |
224 |
tcac |
227 |
Q |
| |
|
|||| |
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|
| T |
1224205 |
tcac |
1224208 |
T |
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