View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13993_low_44 (Length: 201)
Name: NF13993_low_44
Description: NF13993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13993_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 8e-97; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 32750290 - 32750104
Alignment:
| Q |
1 |
gctgcagagtctttcatttcactcacctacttgaaaaacaatcaacacactagaatcagactttctctcttcatgtactatcactaacaatctgctttca |
100 |
Q |
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| T |
32750290 |
gctgcagagtctttcatttcactcacctacttgaaaaacaatcaacacactagaatcagactttctctcttcatgtactatcactaacaatctgctttca |
32750191 |
T |
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| Q |
101 |
cttaacaggttatgtaaatgtttttaatacttaggtttcactcagaggaccacaaataaatctactctcctttcaattcaccacttt |
187 |
Q |
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| T |
32750190 |
ctacacaggttatgtaaatgtttttaatacttaggtttcactcagaggaccacaaataaatctactctcctttcaattcaccacttt |
32750104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 32756406 - 32756274
Alignment:
| Q |
1 |
gctgcagagtctttcatttcactcacctacttgaaaaacaatcaacacactagaatcagactttctctcttcatgtactatcactaacaatctgctttca |
100 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32756406 |
gctgcagagtatttcatttcactcacctactataaaaacaatcaaaacactagaatcagactttctctcttcatgtactatcactaacaatatgctttca |
32756307 |
T |
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| Q |
101 |
cttaacaggttatgtaaatgtttttaatactta |
133 |
Q |
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| T |
32756306 |
ctactcaggttatgtaaatgctttcactactta |
32756274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 32552437 - 32552597
Alignment:
| Q |
16 |
atttcactcacctacttgaaaaacaatcaacacactagaatcagactttctc--tcttcatgtactatcactaacaatctgctttcacttaacaggttat |
113 |
Q |
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| T |
32552437 |
atttcacacacctactttaaaaacaatcaaaacactagaaacactctttctctctcttcatgtaccatcactaacaatctgctttcactactcaggttat |
32552536 |
T |
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| Q |
114 |
gtaaatgtttttaatacttaggtttcactcagaggaccacaaataaatctactctcctttcaattcaccacttt |
187 |
Q |
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| T |
32552537 |
gtaaattt-------------gtttcactcagagaatcacaaataaatctaccctcttttcaattcaccacttt |
32552597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 32752761 - 32752672
Alignment:
| Q |
1 |
gctgcagagtctttcatttcactcacctacttgaaaaacaatcaacacactagaatcagactttctctcttcatgtactatcactaacaat |
91 |
Q |
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||||||| || ||||||| |||||||||| || ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32752761 |
gctgcagggtatttcattccactcacctaatttaaatacaatcaa-acactagaatcagactttctctcttcatgtactatcactaacaat |
32752672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 32549011 - 32549110
Alignment:
| Q |
1 |
gctgcagagtctttcatttcactcacctacttgaaaaacaatcaacacactagaat-----cagactttctctcttcatgtactatcactaacaatctgc |
95 |
Q |
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||||||| || ||||||||||||||| |||| |||||||||||| |||||||||| || ||||| |||||| ||||||||||||||||||||||| |
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| T |
32549011 |
gctgcagtgtatttcatttcactcactaactttaaaaacaatcaaaacactagaatagaatcacactttttctcttgatgtactatcactaacaatctgc |
32549110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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